KEGG   Fomitiporia mediterranea: FOMMEDRAFT_165277
Entry
FOMMEDRAFT_165277 CDS       T03132                                 
Name
(RefSeq) exosome component 4
  KO
K11600  exosome complex component RRP41
Organism
fme  Fomitiporia mediterranea
Pathway
fme03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:fme00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    FOMMEDRAFT_165277
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:fme03019]
    FOMMEDRAFT_165277
Messenger RNA biogenesis [BR:fme03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     FOMMEDRAFT_165277
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Cofactors
     FOMMEDRAFT_165277
SSDB
Motif
Pfam: RNase_PH RNase_PH_C
Other DBs
NCBI-GeneID: 18676284
NCBI-ProteinID: XP_007262755
JGI: Fomme1_165277
LinkDB
Position
Unknown
AA seq 284 aa
MSKRHVERTIKSRWPNLATTSASRVEILNDGGYRSDGRRQHELRDFNIDLAVRGQADGSA
MVSQGLTQVLVTVFGPREARSPTQRIHNRAFINVEVNIASFSTSERRKRSRNDKRVLEFA
AAIKSTFEPVIQTHLYPRSEIDIFVQVLQQDGGLLSASINATTLALITGGISLYDYVCAV
SAGVHATHPLLDLNTLEENDVPHLTTAVMPRTRKVTLVTLETRLHADRFEEIFRLACDAG
EVVHKEMRRAILSRTGQLVRALDVGLQGAALQREAEDDQEMPLD
NT seq 855 nt   +upstreamnt  +downstreamnt
atgagtaaaagacacgtcgaacgcacaatcaagtcgcgttggccgaatttggcgacgacg
agcgcgtcgcgcgtggagattctcaatgacgggggctatcgctcggacgggcgcagacag
catgaactgcgcgatttcaatattgatcttgcagttcgcggtcaagccgatggctctgct
atggtttctcaaggcctcactcaagttcttgtaacagtctttgggccaagagaagcgaga
tcccccactcagagaatacataatcgtgcattcatcaatgtcgaagtaaacattgcgtcg
ttcagcacgagcgaacgaagaaagcgctccaggaatgacaaacgtgtcttagagtttgct
gcggccatcaagtcaacttttgagccggtcattcaaacgcatctctacccccgctcagaa
atagatatatttgtccaagtactgcaacaagacgggggccttttgagcgcatctatcaat
gcaaccacgcttgcgcttatcactggaggtatctctttatatgactatgtttgtgccgtt
tctgccggggtgcatgcgactcatcctctcctcgatttaaacaccctggaggaaaatgac
gtcccccatcttacaacggcagttatgcctcgtacccgcaaggtcacactggtgacttta
gaaacccgcctgcacgcggaccgctttgaggaaattttcagacttgcatgtgatgcaggg
gaggttgtccacaaagagatgcgccgcgcgatcctgtctagaaccggtcagcttgtacgt
gctttggacgtcgggctacagggcgccgcgcttcagagagaagcagaagacgaccaagaa
atgcctcttgactag

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