Fomitiporia mediterranea: FOMMEDRAFT_16618
Help
Entry
FOMMEDRAFT_16618 CDS
T03132
Name
(RefSeq) Sm-like ribonucleo protein
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
fme
Fomitiporia mediterranea
Pathway
fme03018
RNA degradation
fme03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
fme00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
FOMMEDRAFT_16618
09123 Folding, sorting and degradation
03018 RNA degradation
FOMMEDRAFT_16618
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fme03019
]
FOMMEDRAFT_16618
03041 Spliceosome [BR:
fme03041
]
FOMMEDRAFT_16618
Messenger RNA biogenesis [BR:
fme03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
FOMMEDRAFT_16618
mRNA degradation factors
5'-3' decay
Lsm complex
FOMMEDRAFT_16618
Spliceosome [BR:
fme03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
FOMMEDRAFT_16618
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
18676448
NCBI-ProteinID:
XP_007262099
JGI:
Fomme1_16618
LinkDB
All DBs
Position
Unknown
AA seq
130 aa
AA seq
DB search
MLPLTLLNAAQNRPMLVELKNGETFNGHLVNCDNFMNITLREVYQTSADADRFWKLTECY
IRGSTIKYLRVPDKLLDEVKEEQSRAREAGRGARGGAGGGARGGRGAPARGRGGARGAPA
RGARGRGRGM
NT seq
393 nt
NT seq
+upstream
nt +downstream
nt
atgcttcccctcactcttttaaatgcagcgcaaaaccgacctatgctggtcgaactgaaa
aatggagagactttcaacgggcatctcgtcaactgtgacaacttcatgaacataactttg
cgtgaagtctaccagacctctgcagatgcggatcgtttctggaaactgacagaatgctac
atccgagggagtaccatcaagtacttgcgtgtaccagataagttactggatgaagtgaaa
gaagagcagagtcgtgcccgtgaagcgggtagaggtgctagaggaggagcaggaggcggt
gcgcgtggaggaagaggtgcacctgcacgagggcgcggtggggcacgcggtgctcctgct
cgtggtgcaagaggtcgtggtcgtggaatgtga
DBGET
integrated database retrieval system