Fomitiporia mediterranea: FOMMEDRAFT_167708
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Entry
FOMMEDRAFT_167708 CDS
T03132
Name
(RefSeq) beta and beta-prime subunits of DNA dependent RNA-polymerase
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
fme
Fomitiporia mediterranea
Pathway
fme03020
RNA polymerase
fme03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
fme00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
FOMMEDRAFT_167708
09124 Replication and repair
03420 Nucleotide excision repair
FOMMEDRAFT_167708
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fme03021
]
FOMMEDRAFT_167708
03400 DNA repair and recombination proteins [BR:
fme03400
]
FOMMEDRAFT_167708
Enzymes [BR:
fme01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
FOMMEDRAFT_167708
Transcription machinery [BR:
fme03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
FOMMEDRAFT_167708
DNA repair and recombination proteins [BR:
fme03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
FOMMEDRAFT_167708
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
Motif
Other DBs
NCBI-GeneID:
18676707
NCBI-ProteinID:
XP_007266146
JGI:
Fomme1_167708
LinkDB
All DBs
Position
Unknown
AA seq
1782 aa
AA seq
DB search
MVGHQFAHSAAPIRKVKEVQFGILSPEEIKAYSVAKIEHPEVIDEATHKLKVGGLNDPRM
GTTDRNFKCQTCGEGMAECPGHFGHIELARPVFHPGFIVKVKKILECICVNCGKLKADTS
SITGRSSSRAWVVRVIGRLTAALTIAHASQTDPAFADRIRLARDPKRRMAAVWSYCKGKM
TCQPDEDQGDAEGMENVEPLKKGHGGCGHQQPQIRKEGLKLLLHYKKNKNEEEEEFKAAQ
PDKRPFTPAEVFNVLRKISDEDLGLLGLSEEYARPDWMILTVLPVPPPPVRPSISADGGA
LRSEDDLTYKLGDIIKASANVRRCEEEGAPAHVISEFEQLLQFHVATYMDNDIAGIPQAL
QKSGRPVKAIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLELDEVGVPRSIAMTLT
YPERVTPYNIAYLQGLVRNGPREYPGARYVIRDTGERIDLRYNKRADAFLQYGWIVERHL
KDGDYVLFNRQPSLHKMSMMCHRVRLMPYSTFRLNLSVTPPYNADFDGDEMNMHVPQSEE
TRAELSQIAWVAKQIISPQANKPVMGIVQDTLCGIRKFTLRDCFLDWQQVQNILLWVPNW
DGTIPTPTILKPKPLWSGKQILSLTIPRGINIYRSPDPKSSNPVFDDGMLIENGEIIFGV
VEKKTVGASQGGLIHVCFREKGPEATRTLFTGLQQVVNYWLFHNGFSIGIGDTVADKKTM
AYITEQIKMRKQNVAKAVEDASSDRLKAAPGMTIRESFESRVERELNLARDHSGQYAQKN
LKEDNNVKQMVVAGSKGSFINISQMSVCVGQQSVEGKRIPFGFRHRTLPHFTKDDFSPEA
RGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDVTVCYDGTV
RNSLGDLIQFVYGEDGMDGAFIERQTIRTFGINDREFEHRYHVDVTDPKGGFLPGVLQVG
IDDSSVELQEKLDTEYERLLEDRRLLREFIFPGRDNSTAHYLPVNLNRIVQNATQIFHID
RRKPSDLEPAYIIDQIQQLADRLIVVRGDDHLTREAAENASLAFKMHLRATFAARPVLEE
FHLNREAFDWVLGEVETKFNQSMAHPGEMCGTLAAQSIGEPATQMTLNTFHYAGVSSKNV
TLGVPRLKEIINVAEKIKTPSLTVYLEPEIAAVDTRAKSVQTELAYTSLRTVTAAVEIWY
DPDQATTVIEEDKEFVDAFFAIPDEEIEANIHFQSPWLLRLELDRSKMLDRKLTMNYVAG
RIAESFKTDLFVIWSEDNAEKLIIRCRVISQGDKDEEDGDTVEEDIFLRQLEHTMLNSVS
LRGVPGISRVFLLAHDKIVVADDGSIQKGDKEWVLETDGVNLKTVMCIDGVDWKRTYSNS
CVEIFGVLGIEAARAAIMKEMRNVIEFDGSYVNYRHLALLCDLMTHRGSLMAITRHGINR
ADTGALMRCSFEETVEILMEAAAVGEKDDCHGIAENVMFGQMAPMGTGAFDVALDMDMLK
DVIVDHRLPVQSMLAAQADGGMTPGQVAMTPYDSNSPMWSSDMAFKGEQAAFSPLAGTGG
DEPSAFAAFPYGRSPMGAGGMSPGPGYSPSSPNAYSPTSPYVPQSPYAGATSPFGTSPYA
TSPFYNRGAATSPTYSPTSPALNLTSPNYSPTSPRYSPTSPSFSPTSPRYSPQSPSFSPT
SPRYSPTSPSFSPASPRYSPTSPVHQSPTSPKYSPTSPQSPASPKYSPTSPAYSPTSPTY
SPASPAYSPTSPQWSPSSPAQNSNMQNGTTRHSAYSTSPSWD
NT seq
5349 nt
NT seq
+upstream
nt +downstream
nt
atggttggtcaccagtttgcgcattccgccgcacccatccgcaaggtcaaggaggttcag
tttgggatcctctcgcctgaagagatcaaagcgtactctgtcgcaaagatcgagcaccct
gaggtcatcgatgaggcgactcacaagctcaaggtcggtggtcttaatgaccctcggatg
gggacgacggatcggaatttcaagtgccagacatgtggtgaggggatggctgagtgtcca
gggcatttcgggcacatcgaacttgctcgaccggtatttcatccaggcttcattgtaaaa
gtgaagaaaattctcgaatgcatttgcgtgaactgcgggaaactgaaggctgatacctcc
tcgataacggggcgttcttcctctcgggcatgggtcgtgcgcgtcatcggtcgtttgacc
gccgcattgaccattgcacatgcttcgcagactgatcctgcgtttgcggatcgaatacga
ctggctcgcgacccgaaacgccgtatggctgccgtctggtcgtattgtaaaggcaagatg
acgtgtcaaccagacgaagatcagggagatgctgagggcatggagaatgtcgaaccatta
aagaaaggccatggtggttgtggacaccaacaaccgcaaatccgaaaagagggactcaag
ctactccttcattataaaaaaaacaaaaatgaagaggaggaagagttcaaagcggcgcag
cccgataagcgaccgttcacgcctgctgaggtattcaacgtcttgaggaaaatctcagac
gaagacttgggcctactcggcttgtcggaggagtacgctcgtcctgactggatgatactg
actgttttacctgttccccctccccctgtgagaccaagcatatctgcagacggtggtgca
ctacgaagtgaagatgacttgacctacaagctgggtgatatcatcaaagcgtcagcaaac
gttcgtagatgtgaggaagaaggcgcaccggcgcatgtcatttctgagtttgagcagctg
ttgcagttccacgtcgccacatacatggataacgacattgctgggataccgcaggctctt
cagaaatctggtcgccctgttaaagccatccgtgcccgcttaaaaggtaaagagggtcgt
ctacgtggtaaccttatggggaagcgtgtcgatttctcggcacgtactgtcattacgggt
gatccgaatttggagcttgacgaagtcggtgtaccgaggagcatcgccatgacgttgacg
tatccggaaagagtgacaccgtacaacatcgcctacctgcaggggctggtacgaaacggt
ccacgagagtatcctggagcaaggtatgttatccgggatacgggcgagcgtatcgacttg
cggtacaacaagcgtgcggatgctttccttcaatatggatggattgtggagagacacctg
aaggacggagactatgttcttttcaaccgtcaaccgtctctgcacaagatgtcgatgatg
tgtcatcgtgtacgactgatgccctattctaccttccgtttgaacctttctgtcactcct
ccctacaatgccgacttcgatggtgatgagatgaacatgcacgttcctcagagcgaagag
acgcgagccgagctcagtcaaatagcctgggtggctaagcaaatcatctcgccgcaggcg
aacaaacctgtcatgggtatcgttcaggatacgctttgtggtattcgcaagtttactctg
cgggactgctttcttgactggcagcaagttcaaaacatcttgctttgggtaccgaattgg
gacggtactattccaacgccaacgatccttaagcctaaacctctatggtcgggaaagcag
attctcagtttgaccataccacgcggtataaatatctaccgttctcctgacccgaagtca
tcgaacccagtctttgatgatggtatgttaattgaaaatggcgagatcatctttggtgtc
gtcgagaagaagacggtcggtgcatcgcaaggcggtttaatacacgtctgtttccgcgag
aagggacccgaagcaactcgtacgctctttacgggtctgcaacaagtggtaaactattgg
ctgttccataatgggttcagtatcggtatcggcgatacggttgcagataagaagaccatg
gcgtacatcacggagcagattaagatgcggaagcagaatgttgcgaaggccgtcgaggat
gcgtcgagcgaccgtctgaaagcagcaccgggtatgaccattcgagagtcttttgaaagc
agagttgaacgtgagctaaacttggctcgtgatcactctggtcaatatgcgcagaagaac
ttgaaagaggacaataacgtcaagcagatggtcgttgctggttcgaagggttcttttatt
aacatctcgcagatgtccgtttgtgtcggacaacagtctgtggaaggaaagcgcatacct
tttggctttaggcatcgtacattaccccactttacgaaggacgatttcagtccagaggcg
cgtgggttcgtcgaaaattcgtacctccgtggtttaaccccacaagaattcttcttccat
gctatggctggacgagaaggattaattgacacagctgtcaagacagcggagaccggttac
atccagcgacgacttgtgaaggcgctggaagacgttactgtttgctacgacggcactgtt
aggaattctctcggcgatctcattcagtttgtctatggtgaagatggcatggatggtgct
ttcatcgagcgccagactatacgaacattcggaatcaatgatcgcgagttcgaacatcgc
tatcatgtcgacgtcaccgacccgaagggtggattcctgcccggagttctacaagtcggt
attgacgactcgtccgttgagcttcaggagaagctcgacacggagtacgagcgtcttctt
gaggaccggagattactccgcgaattcattttccctggtcgcgataattcgacagcgcat
tatcttcccgtcaatctgaatcgaatcgtgcagaatgcaacgcagatcttccatattgac
cggagaaaaccgagtgatctggaaccagcgtatatcatcgaccagatccagcaacttgcg
gaccgtcttatcgttgtacgcggcgatgatcatctcactcgagaggccgccgaaaatgcg
tctctagcattcaaaatgcaccttcgcgcaacattcgctgctcgaccggtattagaagaa
ttccaccttaacagggaggctttcgactgggttttgggtgaagtggagacgaagttcaat
caatcgatggcgcatccgggtgaaatgtgtggtacgcttgctgcgcagtcgattggtgag
ccggcaacgcagatgacgttgaacacgttccactatgctggtgtctcgagtaaaaacgtc
acactcggtgtaccacgtcttaaagagatcatcaacgttgccgagaagattaagacgcca
tcactcacggtgtatctggagccggaaatcgctgctgttgacacgagggccaagtccgtt
cagactgagctagcatacacgtcgctgcgcacggtgactgctgcggttgaaatctggtac
gatcccgaccaagcgacgactgttatagaagaggataaggagttcgttgatgcattcttc
gctattcccgatgaggaaatcgaggcgaacatccatttccagtcgccatggttgctgcgt
cttgagctcgatcggtcaaagatgcttgaccgaaagctcacgatgaactacgtcgccggc
cgcatcgcggaaagcttcaaaacggatttgttcgtcatttggagtgaagacaacgcggaa
aagttgattattcgttgtcgtgtcatcagtcagggtgacaaggatgaagaggatggggac
acggtagaagaggatatattcttgcgtcagcttgagcatacgatgctcaactccgtcagt
cttcgtggtgtgccaggcatctcgcgagtcttccttctagcgcatgacaagattgtcgtc
gcggacgatggttcgattcagaagggtgacaaagagtgggttcttgagacagacggagtt
aacttgaagactgtgatgtgtatcgatggagttgattggaagcgcacgtactcgaatagc
tgtgtggaaatctttggtgtgctgggcatcgaagcggctcgggcggcgatcatgaaagag
atgagaaacgttatcgagtttgatggttcttatgtgaactatcgacaccttgccttgctt
tgcgaccttatgacacaccgcggttcattgatggccatcactcgtcacggtataaaccgt
gcggatactggagcgcttatgaggtgttcattcgaggagaccgttgagatcctcatggaa
gctgcagctgttggcgagaaagatgactgccacggtattgcagaaaatgtgatgtttggc
caaatggcaccaatgggtactggcgcatttgatgttgcgctggacatggacatgcttaaa
gacgtgattgtcgatcatcgattacctgtacagagcatgcttgcggctcaagccgatgga
ggaatgactcccggccaggtagcgatgacaccatacgacagcaactcgccaatgtggtcg
agtgacatggcattcaaaggagaacaagccgcgttctctccgcttgccggaacgggtgga
gacgagccatctgccttcgcagcgttcccttacggccgaagccccatgggtgcgggcggg
atgtctccaggaccgggctacagcccgagttcgcccaacgcgtattccccaacatcaccc
tacgttccgcagtcgccctatgctggcgcgacctcaccgtttgggacatcgccgtatgcg
acgtctcccttctataatcgtggagctgccacctcgccgacgtactcacccacgtcaccg
gcgctcaacttgacgtctccaaattattcaccaacgagcccgagatactcgcccacgtca
ccatcattttcaccaacgtcgccgcggtacagtccgcaatcgccttccttcagccctacc
tcccctcgttattctccaacgagtccgtcgttcagtcccgcgtcgccaagatattcacct
acttctcctgttcatcaatcgcccacctctcctaaatattctcccacctctcctcagtct
cctgcgtcacctaaatattccccaacctcgcctgcatactcccctacctctccgacatac
tctcctgcgtcgccagcatatagtcccacttccccgcaatggtcaccatcaagcccagcg
cagaatagcaatatgcagaacgggacgacgcgacattcggcgtacagtacgtcgccatca
tgggactga
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integrated database retrieval system
