KEGG   Fomitiporia mediterranea: FOMMEDRAFT_168154
Entry
FOMMEDRAFT_168154 CDS       T03132                                 
Name
(RefSeq) PIN domain-like protein
  KO
K04799  flap endonuclease-1 [EC:3.1.-.-]
Organism
fme  Fomitiporia mediterranea
Pathway
fme03030  DNA replication
fme03410  Base excision repair
fme03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:fme00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    FOMMEDRAFT_168154
   03410 Base excision repair
    FOMMEDRAFT_168154
   03450 Non-homologous end-joining
    FOMMEDRAFT_168154
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:fme03032]
    FOMMEDRAFT_168154
   03400 DNA repair and recombination proteins [BR:fme03400]
    FOMMEDRAFT_168154
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:fme04147]
    FOMMEDRAFT_168154
DNA replication proteins [BR:fme03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    FOMMEDRAFT_168154
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     FOMMEDRAFT_168154
DNA repair and recombination proteins [BR:fme03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     FOMMEDRAFT_168154
Exosome [BR:fme04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   FOMMEDRAFT_168154
SSDB
Motif
Pfam: XPG_I XPG_N OmdA
Other DBs
NCBI-GeneID: 18676778
NCBI-ProteinID: XP_007266799
JGI: Fomme1_168154
LinkDB
Position
Unknown
AA seq 546 aa
MGVQGLTPFLQRHCPQVVKELPERLRDFGGKTIVFDGTLITHRFHFAPHPHQYRHVLGWY
RLINELKNNDVNAICVFDGASRSAAKVLEGERRQSARQLTLARWTMEVKRQQRLQSLSKI
LKKYRSLSLQERRAASAGLISSISEASRKSRRTLPSVPDDSIIEQADDIAGQPVGPWPAA
DVYEEEERIHTRNEDHLLPQLSMHEGDPVLWTDEPVILDQDFTDLEHRAPPSLKYDLSEQ
LSALYASHETSSKTIQAISEPTPAEPDEASESKNQLVLTRDEGLLWSDIQSVVTNPRDLT
THVLLGDLLTRSKILSENYERRCKPPTQETYEESKMMLEALGVPTIECNGPYEAEGLASS
LVRHGLAHFVASEDTDVLVYGATLLRNMTSRHGAIVAISSEEVRRALRLSRAAFMDFALL
IGTDFSSRLRNVGPVRALNFISTHARIEQIIKKETRYTPPDIKTYLAQIRRARQIFTTLP
PVPRKELLEPAEVDKERVTELLHRFGLSRAATDADWDPQASLAGNYFSDSPVGEGTVVGV
SEMHFY
NT seq 1641 nt   +upstreamnt  +downstreamnt
atgggagtacagggcctcacgcctttcctccagcgacattgcccacaagtcgtcaaagag
cttcctgaacgtctccgcgacttcggtggaaagacaatcgtctttgatggaactcttata
acacatcggttccactttgcgccacatccgcaccaataccgacacgtcttgggatggtac
cgactaattaacgaactcaagaacaatgatgtcaacgcaatatgtgttttcgacggagcg
agtcgttctgctgccaaagttctcgagggagagaggcgccaaagcgctcgtcagctgact
cttgctcgatggaccatggaggtcaagcgacagcagcgcctccaatctctcagcaaaata
ctcaagaaataccgatcacttagtctccaagagcgtagggctgcctctgcaggactcata
tcctctataagcgaggctagccggaaatcaagacggacattaccctccgttccggacgat
tcgatcatagaacaggcggatgacatagctggtcaaccggtcggtccttggcctgctgca
gatgtatatgaggaggaagagcgcattcatacgcggaacgaagaccatttactacctcag
ctgagcatgcatgaaggggatccagtgttatggaccgacgagcctgtaattcttgaccag
gacttcactgacctagagcatcgcgcaccaccttcactgaagtatgacctatccgagcag
ctcagtgctctgtacgcatcacacgagacttcctccaaaacaattcaagccatatcggag
cctacgccagcagaaccagatgaagcatcggagtccaagaaccagttggtgctgacacga
gacgaaggccttctgtggtccgacatacaatcagtggtcactaatccacgagatttaaca
acgcatgtgttacttggggatctcctcacgcgtagcaagatcttgtcggaaaactacgag
aggcgttgtaaacctcctacgcaagagacatacgaggagagtaagatgatgcttgaggcg
ctgggagtaccaactatcgaatgtaatggtccttacgaggcagaaggtctcgcttcttca
cttgtcagacatggacttgcacactttgtagcgagtgaagatacagacgttcttgtatac
ggtgcaactctcctgcgtaacatgacatcccggcacggcgcaatagtcgctatctccagc
gaagaagtccgacgtgcacttcgactctctcgtgcagcattcatggacttcgcacttctc
atcggaacggacttttcctcaagactacgcaacgtcggaccagtacgcgctctgaacttc
atctctacgcacgcacgaatcgaacagatcataaagaaagaaactcgctacactcctcca
gacatcaagacatacctcgcacaaatccgacgtgcacgacaaatttttactacacttcca
cctgttcctcggaaagaactcttggagcctgctgaagttgacaaagagagggtcactgag
ctgcttcatcgctttggactttcccgtgcagctaccgatgcagattgggatcctcaggcg
tcactggctggaaactacttctccgacagccctgttggcgaaggcacggtggttggggtg
tcggagatgcatttttactaa

DBGET integrated database retrieval system