Fomitiporia mediterranea: FOMMEDRAFT_169052
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Entry
FOMMEDRAFT_169052 CDS
T03132
Name
(RefSeq) beta and beta-prime subunits of DNA dependent RNA-polymerase
KO
K03018
DNA-directed RNA polymerase III subunit RPC1 [EC:
2.7.7.6
]
Organism
fme
Fomitiporia mediterranea
Pathway
fme03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
fme00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
FOMMEDRAFT_169052
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fme03021
]
FOMMEDRAFT_169052
Enzymes [BR:
fme01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
FOMMEDRAFT_169052
Transcription machinery [BR:
fme03021
]
Eukaryotic type
RNA polymerase III system
RNA polymerase III
Core subunits
FOMMEDRAFT_169052
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Zn_ribbon_PaaD
YqzH
Motif
Other DBs
NCBI-GeneID:
18676931
NCBI-ProteinID:
XP_007268076
JGI:
Fomme1_169052
LinkDB
All DBs
Position
Unknown
AA seq
1403 aa
AA seq
DB search
MKDSVSHNAPKVIKQIQFSLLNAQDIVKLSEFQVTHQDLYTPVDRVPVRDGVLDRRLGTT
EKSAFCETCGLSSADCVGHYAYIKLALPVFHVGYLKHIVTILQCICKSCARVLLSEPDRR
TYLKRFRRPHLENIHRTSLVKSINSSARKVVYCPYCSSTNGTVKKAGAIKIVHDKFRAKK
TADELERFKRSFAKAIEGQKEIGMYINKAVQEDLNPLKVLDLFRRISDEDCELLGLNPSH
GRPEEYIWQYISVPPVCIRPSVAQDGASNEDDLTVKLTEIVFTSALIKQGLAKGAPTQQF
MEQWDFLQVSVAIYINSETPGIPIQMAQKPIRGFCQRLKGKQGRFRGNLSGKRVDFSGRT
VISPDPNLRIDEVAIPERVAKILTYPERVTAHNVNVLRYAVRNGCDVHPGANYVTAGSSG
FKKFLKFGNRNAIADGLRIGDVVERHLIDGDVVLFNRQPSLHKLSIMCHRVKVRPWRSFR
LNECVCGPYGADFDGDEMNIHVPQTEEARTEALTLMSIKLNLVTPRNGEPVISAIQDFIT
ASFLLSQRDRFFDRQQFAQICSYFCDADLQIDIPPPTILKPQRLWTGKQIFNVLMRPNKR
SNVLVNVESKCNKEQKPDPANYPRMNPAPDLSPNDGYLVIVNSEIMCGVMDKATVGSGKK
RSIFGVILRDYGPDEAAAAMNRIAKLCARWLSNIGFSLGINDVIPGPTLSANKDKLIETA
YETCIDLIAQAKKGKLENKPGCNQEQTLEAMISGVLSKVRDTVGDTCMKELSRHNAPLIM
ATCGSKGSAINVCQMVACVGQQIIAGKRVPDGFQDRSLPHFPKKSKEPPSKGFVRNSFYT
GLLPTEFLFHAISGREGLVDTAVKTAETGYMQRRLMKALEDLTTMYDMSVRNSEGGVVQF
QYGDDGLDPGCLEGDAQPVELNRSWSHARAISSRRGRGLLPYEIIDLVDEELSSKKFTGV
CSDTYIAVLRQFIYDNAVKPLAEQRKEHGMYDALQKEDEWDADTDLSMGATDAEFKIISN
QIKVTHTHLLTFLTLCLKKYLKAKIEPGSTVGAVGAQSIGEPGTQMTLKTFHFAGVASMN
VTLGVPRIKEIINAAKTISTPIISCRLVNNMSEASARIVKGRLEKTLLGDVASVLEEAWA
PEYTYIGIIVDMDAVQKLQLELTLDDIKWAIVAAKKLKVKQESIIVIPKKNRLRIYINGE
DKFYRLRELRRALPSVVVKGIQTVQRAIINIKDKDDHRGKKGDKEMLVEGYGLQKVMITD
GIVGEYATTNHIIETAAVLGIEAARANIINEIQFIMKEHGMSIDPRHVMLLGDVMTYKGE
ILGITRFGVAKMKDSVLMLASFEKTTDHLFDASAYGKTDSILGVSESIIMGNPAAKCGTS
MPSLVTPPPPISKPRKLIFEDAL
NT seq
4212 nt
NT seq
+upstream
nt +downstream
nt
atgaaagactctgtgtcacacaatgctcccaaagtcatcaagcaaatccaattcagcttg
ctaaacgcacaagacattgtcaagctttctgaattccaggttacgcatcaggatttgtat
acgcctgtggatagggtgcctgttagggatggggttttggatcggagactcggaacgacg
gagaagagtgcgttttgcgagacgtgtgggttgtcttctgcagattgtgtgggacactat
gcgtatatcaagcttgcgttacctgtgttccatgttgggtaccttaagcatatcgtcacc
atcttacaatgcatatgcaagtcctgcgcacgcgtcctcctctccgaaccagaccgccga
acatacctcaaacgtttccgtcgtccacacctcgaaaacatccaccgcacatccctagtc
aaatccatcaactcatccgcccgtaaagtcgtctactgcccttactgttcctcaacaaac
ggtaccgtcaaaaaagcaggtgcgatcaaaatcgtacatgacaagttccgcgcgaagaaa
actgcagatgagttggagaggtttaagaggtcgtttgcgaaggctatcgagggacagaag
gagattgggatgtatattaataaggcggttcaggaggatttgaatcctttgaaggttttg
gatttgtttaggaggatatcagatgaggactgcgaactcctcggcctaaacccctcccac
ggccgtccagaagaatacatctggcaatacatctccgtaccccccgtctgcatccgtccc
tccgtagcccaagacggcgcatcaaacgaagacgacctcacagtcaaactaacagaaata
gtcttcacttccgcattaatcaaacaaggactagcaaaaggcgctccgactcaacaattc
atggaacaatgggatttccttcaagttagcgtagcgatatatattaattcggagactccg
ggtataccgattcagatggcgcagaaaccgattagggggttttgtcagaggcttaagggg
aagcaggggaggtttcgagggaatttgagtgggaagagggtggatttctctgggaggact
gttatttccccggatccgaacttgagaatcgatgaagttgctattccggagcgagttgcg
aagatcttaacttatccagaacgcgttactgcgcataacgtcaatgtgctgagatatgcg
gtgaggaatggatgtgatgttcatcctggggcgaattatgttacggctgggagtagtggg
tttaagaagtttttgaagtttggaaatcggaacgctattgcggatgggttgaggattggt
gatgttgtagaacgacacttaattgacggagacgtggtgctgttcaatcgacagcctagt
ttgcacaaactttctatcatgtgtcatagagtcaaagtgagaccatggcgatccttccga
ctaaacgaatgcgtatgtggtccttacggtgccgacttcgacggtgacgagatgaacatc
cacgtaccacaaaccgaagaagcacgcaccgaagccctcaccctaatgagcatcaaactc
aacctcgtcacaccccgcaacggcgaacccgtaatctccgcaatccaagacttcatcacc
gcatccttcctcctctcccaacgtgatcgtttcttcgaccgtcaacaattcgcacaaatc
tgttcctacttctgcgacgcagacttacaaatcgacatccctcctccaactatactcaaa
cctcaacgactatggacgggaaaacagatttttaacgtcctgatgcgtccgaataaacga
agtaacgtactagtcaacgtcgaatcgaaatgtaacaaagaacaaaaacctgatcctgcg
aattacccgaggatgaaccctgctcctgacctttcgccgaatgatgggtaccttgttatc
gtcaatagtgaaatcatgtgtggtgttatggataaagcgactgttgggagtgggaagaag
aggtcgatatttggtgttattttgagggattatgggcctgatgaggctgctgctgctatg
aataggattgcgaagctttgtgctcgatggctctctaacataggcttctcactcggtatc
aacgacgtaatccccggaccaaccttatcagcaaacaaagacaagctaatcgaaacggcc
tacgagacgtgcattgacctcatcgcacaggctaagaaaggcaaactcgagaataaaccg
ggttgcaatcaggaacaaacactagaggctatgatttccggtgtgttgtccaaagtccgt
gatacggtcggagacacatgtatgaaggagctcagccgacataacgcaccgctcatcatg
gctacctgtggttcaaaaggctctgctattaacgtctgccaaatggtcgcatgcgtcggc
caacaaatcatagccggcaaacgcgtcccagacggcttccaagaccgttccctcccccac
ttcccaaaaaaatcaaaagaacctccctcaaaaggtttcgtccgtaacagtttctacaca
ggtctcctacccaccgaattcctcttccacgctatctccggtcgagaaggtttagtcgac
actgctgttaagactgcggaaacagggtatatgcagcgcaggttgatgaaagcgttggaa
gacttgactacgatgtatgatatgagtgtgaggaattctgagggaggggttgttcagttt
cagtatggggatgatgggttggatcctggatgtcttgaaggtgatgcacagcctgttgag
ctgaataggtcttggagtcatgctcgggccatctcatcgcgacgaggtcgtggactatta
ccttacgagattatagacctcgtcgacgaagaactctcatccaaaaagttcaccggagtt
tgctcggacacgtacatcgccgtacttcgtcagttcatctacgacaacgcagtaaagcct
ctagcggaacaaagaaaagaacatgggatgtacgacgctttacaaaaggaggacgaatgg
gacgcagatacggacttgtctatgggtgcaaccgacgcagaattcaaaatcatctccaac
caaatcaaagtaacccacacccacctccttacattcctaaccctctgcctcaaaaaatac
ctcaaagccaaaatcgaaccagggtccacagtcggtgcagtcggcgcccaatccatcggt
gaacccggaacgcaaatgacactcaagacattccatttcgctggtgttgcgagtatgaac
gtgacgttgggtgtaccgcggataaaggagattattaacgctgcgaagacgattagtacg
ccgattattagttgtagacttgttaataatatgagtgaggcgagtgcgaggattgttaag
gggaggttggagaagacgcttttgggtgacgttgcgtcggtattggaagaggcatgggca
ccggagtacacgtacatcggtatcatagttgacatggacgccgtccaaaaacttcagctc
gaactcacgctcgacgacatcaaatgggcaatcgtagcagccaagaagctcaaagtaaaa
caagaatcgatcattgtgataccaaaaaagaaccgcctccgaatatacataaatggagaa
gacaagttctaccgcttgagagaacttcggcgtgctttaccctccgtagtagtcaaggga
atacaaaccgtccaacgtgcgattatcaatatcaaggacaaagacgaccatagaggaaag
aagggtgacaaggagatgctcgttgaggggtacggacttcagaaggttatgattacggat
ggtattgtcggcgaatacgcaacgacaaatcacatcatcgagaccgccgccgtactgggg
atcgaagctgcccgcgcgaacatcatcaacgaaattcagttcatcatgaaagagcatggg
atgagcatcgacccgcggcatgttatgttgcttggggacgttatgacttataagggcgag
atcctaggcatcacccgcttcggcgtagccaagatgaaagatagcgtcctcatgctcgct
tccttcgaaaaaacaacggatcacttgttcgacgcgtccgcgtatgggaagacggatagt
attcttggtgtatcggagagtattatcatgggtaacccggctgcgaagtgtgggacatct
atgccatcactcgtcacgcctccaccgccaataagcaaacctcgaaaactaatattcgag
gacgctttatga
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integrated database retrieval system
