Fomitiporia mediterranea: FOMMEDRAFT_169392
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Entry
FOMMEDRAFT_169392 CDS
T03132
Name
(RefSeq) hypothetical protein
KO
K01669
deoxyribodipyrimidine photo-lyase [EC:
4.1.99.3
]
Organism
fme
Fomitiporia mediterranea
Brite
KEGG Orthology (KO) [BR:
fme00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fme03400
]
FOMMEDRAFT_169392
Enzymes [BR:
fme01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.99 Other carbon-carbon lyases
4.1.99.3 deoxyribodipyrimidine photo-lyase
FOMMEDRAFT_169392
DNA repair and recombination proteins [BR:
fme03400
]
Eukaryotic type
SSBR (single strand breaks repair)
Direct repair
FOMMEDRAFT_169392
Prokaryotic type
FOMMEDRAFT_169392
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
FAD_binding_7
DNA_photolyase
PIN_4
Motif
Other DBs
NCBI-GeneID:
18676975
NCBI-ProteinID:
XP_007268507
JGI:
Fomme1_169392
LinkDB
All DBs
Position
Unknown
AA seq
1055 aa
AA seq
DB search
MTLESDGQPYVTVCMEIEPICLMLPRLRPVVRCSALRSSYLSCVRTSSAQMSKRAHSEDR
DGIVDGHRLGNLKKARVQARPLYNKVATAENAAAVDENPPLRILLDAMQNGLENVKKGES
VVYWLRMEDLRVVDNRALSLASEQAQSHNIPLLVLFVISPQDYEAHDRGPRRIDFMLRNV
KVIQDDLDKLHIPLYIVTVEPRHSIPSRVISLLEDWGATQLFANISYEVDELRRDIKIHA
AGKKANIKCDFIQDKLVVNPGILKTKNGRAYTVYSPWQRNWVTTLNESLEWIEEAPMPKA
NDKAIRSSGRFSGLFESKVPEFVDRFECADKDKMAEYWPGGTKVALQMLDRFLHTKARSS
QIGETSPLSDGAEESNKSSRIQEYSTGRNLTDMDTTSRLSPYLASGVISARACIRATMKF
LNCKNIEANRGNGVGMWVQEIAWRDFYNHVMVAFPRVSMGRSYLEKYADVKWETNEEHLQ
AWKDGKTGVPIVDAGMRQLNEFGWMHNRCRMIVAMYLTKDLMLDWRLGEKYFMENLIDGD
LASNNGGWQWSASTGTDPQPYFRIFNPVSQSEKADPSGNYIRHYVPELRKLTGKVTMLRQ
SRWAPSQGTKSIHASGKIDVPDDALREPSSSKTVLPQPQNFSGWSDPALRLIDEEVNRMD
IDSEASSGVKDSVSLGQIDLVVDTNVLLRYLDVLQQFAGDVDRVHFPISIIIPGIVVEEL
DYQKNDKSRQLCWTARMASTWILSKLKERRSVKGQAYKQTMQKSGSWKRRDPGTCNDDLI
VDCCLFLREKQHHNVLAISQDNNLCTNAESQGILTLNPKTLTRWSSRSLARYLFGNDYPF
LNEFSDYKETFRPRRVREALDDELGVPEVTKTITHEDDGMEVDDDDFILKDPPPQHLLDD
LHDQVIGHFGILLSELLQRVAPASLFTQAPSKSGAASSIYASSSSCKPAKDWKANEILEY
LCNARRVPRTASAADVKELTSDYSRMINFFTHKYDPRGRSGQHWSRADWVSCLEKLGVLG
RAYMDDAILNSLAQLMPQLALVFETPMRPTGTGGF
NT seq
3168 nt
NT seq
+upstream
nt +downstream
nt
atgacgttggaatcggacgggcagccttatgtcacggtttgtatggaaatcgaaccaatt
tgtcttatgcttcctcgactcagacctgtagtccgctgttctgctctacgttcatcttat
ctctcctgtgtccgcacatcttctgctcaaatgtcaaaacgagcccattccgaggatcgc
gacggaatagtggacggtcatagactcggaaatttgaagaaagcaagagtacaagcaagg
cctctttacaacaaggtagccaccgccgagaatgctgccgcggttgacgagaaccctccc
ttgcggattctgcttgatgcaatgcagaatggtcttgaaaatgtgaagaaaggtgaatca
gttgtttactggttgagaatggaagatttgcgagttgtcgacaaccgtgctctgagtctt
gcgtcggaacaagcacaaagtcataatattcctttgctcgtccttttcgtcattagtcct
caggactatgaagctcatgatcggggtccaagacgcatcgactttatgcttcgaaatgtt
aaagtcatccaggacgacctggataagttgcatattccattgtacatcgttactgtagag
ccgcgccactctattccttcaagggttatttctttgctagaggactggggagcgacacaa
cttttcgcaaatatatcatatgaagtcgatgagctgagacgagatattaagatccatgca
gccggcaagaaagctaatataaaatgcgatttcatacaagataaattggttgtcaatcct
ggaatcctgaagactaagaatggaagggcatatactgtatactcgccgtggcagaggaac
tgggttaccactctcaatgaaagcttggagtggatcgaagaagctccgatgccgaaagca
aacgacaaagcaattcggtcgtctggacgtttttcgggattgtttgaatcaaaggttcct
gagttcgttgaccgctttgaatgcgcagacaaggacaagatggctgaatactggcctggt
ggaactaaggtggcacttcagatgttagatcgtttcttgcacacgaaagctcgctctagt
cagataggagaaacatcccctctctcggacggcgcggaagaatcgaacaaaagcagccga
atacaagaatatagcacaggaaggaaccttaccgacatggatactacatctcgtttaagt
ccttatctcgcttctggcgtaatttctgctcgtgcttgtattcgcgcgacgatgaaattc
ttgaattgcaaaaacattgaagctaatagaggaaatggcgtaggcatgtgggtacaagaa
atagcttggagggacttttacaatcacgtcatggtcgcctttccgagagtttcgatgggg
aggtcttatcttgagaaatatgcagacgtcaaatgggagaccaacgaagaacatttacag
gcatggaaagatgggaaaactggtgttccgattgtcgatgcaggcatgaggcaattgaac
gagtttggatggatgcataatcggtgtcgcatgattgtcgcaatgtacctgacgaaggac
cttatgctagactggagactgggagaaaagtatttcatggagaatctcattgacggagac
ttggcatccaataacggtggttggcagtggagtgcaagtactggcacggaccctcaaccg
tacttccgtatcttcaatccagtgtcacaaagcgaaaaagcggacccatcaggaaattac
atacgacattacgtgccagaactccgcaagctcacaggaaaagtgactatgctcagacaa
tctcgttgggctccgtcccaaggaacaaagagcattcatgcttcagggaagatcgatgta
cctgatgatgcgttgcgcgagccatcatcctcaaaaacagtgttgcctcagccacagaac
ttctcaggatggtctgatcctgctctgcggctgatcgatgaggaagtgaatagaatggat
attgacagcgaggcttcaagtggcgttaaggactctgtgtctttaggtcaaatagacctt
gtcgtagatacaaatgttctgcttcggtaccttgatgtgcttcagcaattcgccggtgac
gtagatcgagtgcattttcccatatctattatcattccgggcatcgtagttgaggaactg
gactatcagaagaacgacaagagccggcagctatgctggacggcgcggatggcttcaacg
tggattctttcgaagctaaaagagcgtcggagtgtcaaaggccaggcatataagcaaaca
atgcagaagtctggttcttggaagagaagagatcctggcacttgtaacgatgatctaata
gttgactgttgcttatttcttcgggagaagcaacaccacaatgtacttgcgattagccag
gataacaacttgtgcactaatgcagagtcccaaggcattttgactctgaacccaaagact
ctcactcgttggtccagtagatccctggcccgatacctcttcggaaatgactatccattc
ttaaatgaattctccgattacaaggaaacgtttcgtcctagacgtgtacgcgaggctctc
gatgatgaattaggagtgccagaggtgacgaaaaccatcacacacgaagatgacggcatg
gaggttgacgacgacgacttcattctgaaggatcctccaccacagcaccttctggacgat
cttcacgaccaagtgataggacattttgggattcttctttctgagctgctgcagcgtgtt
gcacctgcgagtttattcacacaagcaccctcgaagtctggggcagcatcttcgatttat
gcatcatctagttcatgtaaacctgcgaaggattggaaggcgaacgagattcttgaatac
ttatgcaatgcgcggcgtgtaccccgaactgcctcggctgcggatgtcaaggagctgacg
agcgattactcgcgcatgataaatttcttcactcacaagtacgatccgaggggccgcagc
ggacagcattggtctcgtgcagattgggtttcgtgcctggaaaagctgggagtgttggga
cgggcgtacatggacgacgcgattctgaattcactggcgcagctgatgcctcagttggca
cttgtattcgagacgcccatgcggcccactggaaccggtggattctag
DBGET
integrated database retrieval system
