Fomitiporia mediterranea: FOMMEDRAFT_171056
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Entry
FOMMEDRAFT_171056 CDS
T03132
Name
(RefSeq) hypothetical protein
KO
K27407
RNA-binding protein VTS1
Organism
fme
Fomitiporia mediterranea
Brite
KEGG Orthology (KO) [BR:
fme00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fme03019
]
FOMMEDRAFT_171056
04131 Membrane trafficking [BR:
fme04131
]
FOMMEDRAFT_171056
Messenger RNA biogenesis [BR:
fme03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
FOMMEDRAFT_171056
Membrane trafficking [BR:
fme04131
]
SNARE
SNARE associated proteins
Others
FOMMEDRAFT_171056
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SAM_2
SAM_1
Motif
Other DBs
NCBI-GeneID:
18677253
NCBI-ProteinID:
XP_007271340
JGI:
Fomme1_171056
LinkDB
All DBs
Position
Unknown
AA seq
697 aa
AA seq
DB search
MSLRPPSTSPSPSPAPNGNAKANARASMGPSSNRPAPINLVNPPASPRPGSGRPTSELLG
NQGMFQTPEAEAIDQWFENLQNYEATLEEMAAASLDVNFKEELSAIEQWFRVLSEAERTA
ALYSLLQHSTQVQIRFFITVLQQMARADPMTALLSPNAGGSMQSQMEAKLAQMGLKSPGL
KSNMPSSPSARNFSGNLTGNRQSLAVEPSSNSFLSPDSAANTGGNNDAAATLAQQRAKLK
ANAAHRISAPALAGAGGSNVWGGSGASSLGQVAERIADSDGAQEITIPAPSGAPGSARPK
STDFSGLLRSPRLNNVANENEGLEAQLSPMVGGNWASMVNTPRDLMFDVQNQGGNQNLDA
AAAKLASWQVGNSGGRFSLDDAKKFRRTSKSTTNENGANAMSNGPTGNNPNNVVYGDDGN
VISSGSQRNSRSQSGLNKSGYPGNSQLRSPALSNVSSGRFGGSDDGGFGAVGMNAFGIGM
PSPSLQNMGGLGNMATMQQLMAAAQMGQLSPLQMQQLNMNMMGMNMGMPDVQMQALLQAQ
MAGGLMQPGFGGFGAQAALLNNMNNRGNSSRGSSRMASTGSGNRSNNGRGDGNKDKEDDF
DPSLLNDVPAWLRSLRLHKYTPNFEGMVWRDMVVMNEADLEAKGVAALGARRKMLKTFET
VRSKMGIKMPGESGSGENMEGNKDGNLNEGAGTVDAA
NT seq
2094 nt
NT seq
+upstream
nt +downstream
nt
atgtctctacgacctccatctaccagtccaagcccttcgcccgcgcctaatggaaacgca
aaggcaaatgcgcgtgcgtctatgggtccgtcttctaatcgtccggcgcccatcaacctt
gtgaacccgcctgcgtcgcctcgccctgggtcaggtcgtccaaccagcgagcttcttggt
aatcaaggcatgttccagactccggaagctgaggctatcgaccaatggtttgaaaatttg
caaaattatgaagcgacgttggaggaaatggctgctgcatctctggatgtcaatttcaaa
gaggaactgagtgcgatcgagcaatggttccgcgttctctcggaggccgagcgcacagct
gctttgtatagtcttctgcagcattcgactcaagtgcagattcgtttcttcatcacagtc
ctgcagcagatggctagagcagatccgatgactgcacttctcagtcctaatgcgggtggt
tcgatgcaaagccagatggaagccaagctcgcacaaatgggcctaaaatctcctgggctt
aaatctaacatgccctcttccccgtccgcgcgtaattttagcggtaatttaacgggtaac
cgtcagtcacttgcggttgagcctagctcgaattccttcctttctcccgactctgctgcg
aataccggtggtaacaacgatgcggctgcaactttagctcagcagcgtgcgaaacttaag
gctaatgccgcacatcgtatctccgcccctgctctggccggtgctggcggaagcaatgtt
tggggtggttctggtgcaagctctcttggtcaagttgctgaacgcattgcagacagtgat
ggtgctcaggagattactatccctgccccatctggtgcaccaggcagtgcgcgtccgaag
agcaccgactttagcggcctcttgcgttcacctcgtctaaacaacgtcgcgaatgagaac
gaaggtctcgaggcccaattgagccctatggtcggcggaaactgggctagcatggttaac
actcctcgcgatctaatgtttgacgttcagaaccagggcggtaatcaaaatcttgacgct
gcggcagctaaactggcttcttggcaagttggcaactctggggggcgtttcagtctcgat
gatgcgaagaagttccgccgcacctcgaaaagcaccactaacgaaaatggcgcgaacgct
atgtcgaacggcccaacggggaacaatccgaacaatgttgtctatggtgatgacgggaat
gtcatcagttcgggatctcaacgtaacagtcgttcccagtcgggcctcaacaagtcgggc
tatccgggtaactcgcaactacgcagccctgcactctcaaacgtttcatctggtcgcttt
ggtggaagtgatgatggtggttttggtgcggtgggcatgaacgccttcggtattggcatg
ccttcaccaagtcttcaaaatatgggtggactcggtaacatggctactatgcaacaactg
atggctgcggcacaaatggggcagcttagtccgcttcagatgcagcagctgaacatgaat
atgatgggcatgaacatgggtatgccggatgttcagatgcaggcactccttcaagcgcaa
atggccggtggtcttatgcagcccggatttggcggattcggagcccaagccgcgttgctc
aataatatgaacaatcgcgggaacagctctcgcggttcgtcgcgcatggcgagtactggc
agcggcaaccgtagcaacaacggtcgcggagatggaaacaaggacaaggaggacgacttt
gatcctagccttctgaatgacgtgccagcgtggttgagaagcttgcgtttacacaagtac
acgccgaactttgagggtatggtctggcgtgatatggttgtgatgaacgaagcggatctc
gaggcgaagggtgtcgctgcacttggggcgaggcgtaagatgttgaaaacgttcgagact
gtacgcagcaagatggggattaagatgccgggtgagtctggctcgggcgagaatatggag
gggaataaagatggtaatttgaacgaaggtgcaggcacggttgatgctgcgtaa
DBGET
integrated database retrieval system
