Fomitiporia mediterranea: FOMMEDRAFT_18642
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Entry
FOMMEDRAFT_18642 CDS
T03132
Name
(RefSeq) hypothetical protein
KO
K12572
PAB-dependent poly(A)-specific ribonuclease subunit 3
Organism
fme
Fomitiporia mediterranea
Pathway
fme03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fme00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FOMMEDRAFT_18642
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fme03019
]
FOMMEDRAFT_18642
Messenger RNA biogenesis [BR:
fme03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
FOMMEDRAFT_18642
mRNA degradation factors
3'-5' decay
Pan complex
FOMMEDRAFT_18642
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Pan3_PK
PK_Tyr_Ser-Thr
Pkinase
DUF6217
Motif
Other DBs
NCBI-GeneID:
18677591
NCBI-ProteinID:
XP_007264729
JGI:
Fomme1_18642
LinkDB
All DBs
Position
Unknown
AA seq
473 aa
AA seq
DB search
MDQMSFTDYGESIADDHYAQHDYNGVAEMGSFYDPQHFTRQPLNYHLYSLPVPTSRGRRF
FISDDIREELLKRSEQIHRGPVPGLPLPEEVQGYHSLVPLEMASTDKKKSNPWSTMMYKA
VKTSDGGAYALRRIENFRLMNEQAFTVLEKWTKLRHPGIVSVREAFTTKAFGDNSLVVVY
DYHPNSQSLAELHFKSNKPYQGGRAQPERISEQTLWSYVFQIASAMKVVHDAGLAVRMID
AHKVLLTGQNRVRISSCAVFDILLYDTRQDIFFLQQEDLVMFARLIMSLACNNPLATSNV
HRALDHVHRHYPGNIKDVIHYLMKDPGPMKNIRGLFDTFAGKLVSELDAAHASVDKLEGE
LMGELENARLVRLLCKFGFINERPEFDRDPRWSETGDRYIIKLFRDYVFHSVDESGNPVV
NLGHVLTNLNKLDAGSEERLMLVSRDEQSCLVVSYKEVKNCIEAAFSDLSRNR
NT seq
1422 nt
NT seq
+upstream
nt +downstream
nt
atggatcagatgagctttacggactatggggagtccatagcagatgatcactatgctcaa
catgattacaatggtgtagcagaaatgggttccttctacgatccccaacattttactcgt
caacccctaaactatcatctgtactcgttgcctgttcccactagcagagggcgaaggttc
tttatctccgatgacattagggaggaattacttaaacgttcggaacaaatacatcgcggt
cctgtccccggtctacctcttccggaggaagtgcaggggtatcattctctggtgcctctt
gaaatggcctcgacagataagaagaaatctaacccctggagtactatgatgtacaaggca
gtaaagacgtcggacggtggagcttatgcgctacgtaggatagaaaatttccgcttaatg
aacgaacaagctttcaccgttctggaaaagtggacgaaactccgacatccgggcatcgtg
tctgttcgggaagctttcaccacgaaagcatttggggataattcgctcgttgttgtatac
gactaccatcctaactctcagagcctcgccgaactccattttaagtcgaataagccatat
cagggaggccgagcacagcctgaacgaatatcggaacagacactttggagttatgtcttc
cagattgccagcgcgatgaaggtggttcacgacgcgggcttggctgtgcgtatgattgat
gcacacaaggttctgcttactggccaaaatagagtgaggatcagttcatgcgcggtgttt
gatattttgctttatgatactcggcaagacatcttctttcttcagcaagaagacttggtt
atgttcgcaaggctaatcatgtccttagcctgcaataatcctttagcaaccagtaatgtc
cacagagcgctggatcacgttcaccgtcactatcctggaaatattaaagacgtgattcat
tatttaatgaaggatccaggcccaatgaagaatattcgcggtttattcgataccttcgcg
ggtaaattggtttcggaattggatgcggcacatgcttccgttgacaaactcgaaggagag
ctcatgggcgagctcgagaacgcacgattagttcggttgctttgcaagtttggattcatc
aatgaacgacccgagtttgaccgtgacccgcgttggtccgagactggtgatcgatatatt
atcaagctatttcgggattacgtcttccattctgtggacgagagcgggaaccctgtggta
aacctaggtcatgtgttgacaaatttaaacaagcttgatgctggatctgaagagcgcctc
atgctagtctcacgggacgaacagagctgtctcgtcgtctcttataaagaggtcaagaat
tgcatcgaagcggcttttagtgatttgtccagaaatcgttga
DBGET
integrated database retrieval system
