Fomitiporia mediterranea: FOMMEDRAFT_19006
Help
Entry
FOMMEDRAFT_19006 CDS
T03132
Name
(RefSeq) DNA-dependent RNA polymerase II second largest subunit
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
fme
Fomitiporia mediterranea
Pathway
fme03020
RNA polymerase
fme03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
fme00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
FOMMEDRAFT_19006
09124 Replication and repair
03420 Nucleotide excision repair
FOMMEDRAFT_19006
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fme03021
]
FOMMEDRAFT_19006
03400 DNA repair and recombination proteins [BR:
fme03400
]
FOMMEDRAFT_19006
Enzymes [BR:
fme01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
FOMMEDRAFT_19006
Transcription machinery [BR:
fme03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
FOMMEDRAFT_19006
DNA repair and recombination proteins [BR:
fme03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
FOMMEDRAFT_19006
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
MRNIP
C1_1
Motif
Other DBs
NCBI-GeneID:
18677665
NCBI-ProteinID:
XP_007265206
JGI:
Fomme1_19006
LinkDB
All DBs
Position
Unknown
AA seq
1274 aa
AA seq
DB search
MSYLPSQNSFPDSSQLGAAESYLNNYADVEVDEDEEEDESFTQEDCWNIISAFFNEKGLV
RQQLDSFDEFVKNTIQEIIEENADLILDQQDQHSGSEKDAARRYHIHFSQIIVSNPSFSE
ADGSTQAIFPQDCRIRNLTYAAPVYCEMTKQTLIGHEDPDSMTGEMIWEPEHGGEALEHV
KPMIGRIPMMLRSYFCNLRKFNERDLYRVNECPYDSGGYFIINGSEKVLIAQERMATNHV
YVFAKAQPSPISFLAEIRSAVEQGGKTISQFQVKMYHRGQERASGSVMKATIPYIKVDIP
IWVVFRALGVISDRDILEHICFDMNDSSMLEMLKPCIDDGFVIQDREVALDFIGNRGTAT
GLNRDKRLRYAQEILQKEMLPHISMAEGSESKKAYFFGYMIHRLLLAALERRELDDRDHF
GKKRLDLAGPLLTGLFRMLFRKLTKDVYRYLQKCVETHKEFNINMAIKTQTLTNGLKYSL
ATGNWGDQKKAMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGM
VCPAETPEGQACGLVKNLALMAVISVGSVSGPVIDFLEEWGLETLEENTQSTNLTKVFVN
GVWLGVCRDPLNMVNTLRTLRRMQDFDSEVSIVRDIREREIRIYSDAGRVLRPLFIVEDH
KLKLKRQHLRWLQEKWRIEERPYVPREERNKEEVSEGETVADEEEGRPIMRDERRVKRKK
KPFTWSSLIRDGVIELLDAEEEETVMICMTPDDLLESRLLRRGLDPRAEADFNPAARLKP
LPIAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLMRQDT
MANILYYPQKPLATTRAMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLF
RSLYYRTYMDQEKRSGAIIVDEFEKPTRDTTLRMKHGTYDKLEDDGLIAPGVNVRGDDII
IGKTAPIPPDSEELGQRTRGHTKRDISTPLKSTEQGIVDQVVVTTNAEGTKFVKIRVRST
RIPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGITPDIIINPHAIPSRMTIGHLVECLL
SKLATIVGNEGDATPFTDLTVDSVSSVLREKGYQSRGLEVMYHGHTGRKLQAQVYLGPTY
YQRLKHMVDDKIHARARGPVQILTRQPVEGRSRDGGLRFGEMERDCMISHGIAAFLKERL
FDASDAYRLHVCDLCGLTAIANLKKQSFECRACKNKTSISQLYIPYAAKLLFQELQAMNI
AARLYTVSTGRIRD
NT seq
3825 nt
NT seq
+upstream
nt +downstream
nt
atgagctaccttccgtcccagaactcgtttcccgatagctcgcagctcggtgcagcagaa
agttatctcaacaactatgcagacgtagaggtggatgaggatgaggaagaagacgagtcg
ttcactcaagaagactgctggaatatcatttctgcgttcttcaacgagaaaggtcttgtt
agacaacaactcgattccttcgatgaatttgtcaaaaacactatacaagagatcattgaa
gagaacgcagacttgattttggaccagcaagatcagcattctgggtcggagaaggatgct
gctcgccgctatcatatccacttttctcaaattatagtatcaaacccgagcttcagcgaa
gccgatggttcgacacaagctatcttcccgcaggactgtcgaatacggaacttgacctat
gctgctccagtgtattgcgaaatgaccaagcagacgttgattggccatgaagacccggat
tctatgactggtgaaatgatctgggagcctgaacatgggggtgaggcgctggaacacgtg
aagcccatgattggtcggattcctatgatgttacggtcctacttctgtaacctgcgtaaa
ttcaacgaacgcgacctctatcgtgtcaatgaatgtccttatgattccggagggtatttt
atcattaacggctcggagaaagtcttgattgctcaagaacgaatggccacaaatcacgtt
tatgtctttgcaaaggctcaaccatcccctatcagtttcttggccgaaattcgtagtgcc
gtggagcagggtggaaagacgatcagtcaattccaagtcaaaatgtaccatagaggtcaa
gaacgagcgtccggcagtgttatgaaggctactattccgtacatcaaggtcgatatccct
atctgggtcgttttccgtgcattaggtgtcatctccgacagagacattcttgagcatatc
tgcttcgacatgaatgactcttcgatgctggagatgctcaagccgtgtattgacgatgga
tttgttatccaggatcgtgaggttgctctagacttcattggtaatcgaggaacggcgact
gggctaaatcgtgacaagcgactgcgatacgcgcaggaaatcttgcaaaaggagatgtta
ccacatatctcgatggctgaaggatcagagtccaagaaagcatatttctttggttacatg
atccaccggttgttgcttgccgctctcgaacgacgtgaacttgatgacagagaccacttt
gggaagaagcgtctggatctcgcgggtcccttgcttacaggactgttccgcatgctcttc
cgaaagttaacgaaggatgtatatcgttacttgcaaaagtgtgtcgaaacacacaaagag
tttaatatcaatatggcgatcaagacacagacccttactaatggtctgaagtactctctt
gcgacgggtaattggggtgatcagaagaaagccatgtcttccaaggctggcgtctcgcag
gtgcttaaccgatacacctacgcgtcaacgctttctcatcttcgaagatgtaacacgccc
ttgggtcgtgaaggcaagatcgcgaagccacgtcaattgcataatacccattggggtatg
gtatgtcctgccgaaacgccggaaggacaggcttgcggtctggttaaaaatcttgcgtta
atggccgtcatctctgtcggctcagtgtcgggacctgtcatcgacttcttggaggaatgg
ggactagagacccttgaggagaatacccagtccacgaatctcaccaaagttttcgttaac
ggcgtgtggctcggggtgtgtcgcgacccgctcaacatggtgaatacactccgtactctc
aggcgaatgcaggatttcgatagcgaagtgtcaattgttcgtgacatccgtgagagggag
atacgtatatactctgatgccggccgagttcttcgaccactcttcattgtggaagaccac
aagctgaaactcaagcgtcagcatctccgctggctgcaggagaaatggaggattgaggaa
aggccgtatgtcccaagggaagaaagaaacaaggaggaagtttcagagggcgagaccgtt
gcagacgaagaagagggtaggccgattatgagggacgaacgaagagtgaagagaaagaag
aagccattcacttggtcttcgttgattcgcgacggtgttattgagctgctggacgcagaa
gaagaggagacggtcatgatctgcatgacaccagatgacttgcttgagtctcgactattg
cgcagaggtctggatccacgcgcagaggctgactttaacccggcggctcggttgaaaccg
ttaccgatagcgcatacatggacacattgtgaaattcaccctagcatgattctgggtatt
tgtgctagtattatacctttccctgatcacaaccagtcgcctcgtaatacttatcaatct
gctatgggtaaacaagctatgggtatctacctcacgaacttcctaatgcgccaagacacg
atggcgaatatcctttactacccacaaaaaccgctggctacgacgagagccatggagtat
cttaagttccgagaattgcccgctggccaaaatgctattgtggccattctctgttacagt
ggctataaccaggaagactccgtcattatgaaccagagctcgattgaccgtggtttgttc
cgtagtttgtattatcgaacttacatggaccaggagaaacgtagtggagcgatcattgtt
gatgaattcgagaaacctacgcgcgatacgacactgcgtatgaagcatgggacgtatgac
aagctcgaagatgatggtctcattgctcctggtgtcaacgttcgtggtgatgatattatc
atcggcaagacagcccctattccacctgatagcgaagagctcgggcaacggacgagagga
cacacgaagcgtgatatctcaactccgctgaagagtaccgagcaaggcattgtcgatcag
gttgttgtcactaccaacgcggaaggcacgaaattcgtgaagattcgtgttcgttctact
cgtatccctcaaatcggagacaagttcgcttcgcgacacgggcaaaagggtactatcggt
attacgtatcggcaggaagatatgcctttcactgcagagggtatcacacctgatatcatc
atcaaccctcacgccattccgtcacgtatgacaatcggacacttagtcgaatgtttgtta
tcgaagttggcgacgatagttggtaatgaaggcgatgcgaccccgttcacggacttgacc
gtcgactctgtatcgtccgtcttgcgtgaaaagggttatcaatctcgtggtttggaagtc
atgtatcatggacatacgggacgcaagctgcaagcgcaggtgtacctcggaccaacatat
tatcagaggttgaagcatatggtggatgataagattcatgctcgtgctcgtggaccggtt
cagattttgacgaggcaacctgttgagggtcgttcgcgtgatggtggtctgcgtttcgga
gaaatggagcgcgattgtatgatctcacacggtatcgctgctttcttgaaagaacgtctc
ttcgatgctagtgatgcctaccgtctacatgtctgcgatctatgcggtttaactgctatc
gcaaacctgaaaaaacaaagcttcgaatgtcgagcatgcaagaacaaaacgagtatttca
cagttatacatcccctatgctgcgaagcttctcttccaggagttgcaggctatgaacatc
gctgcacgcttgtatactgtctcaaccgggagaataagggattga
DBGET
integrated database retrieval system
