KEGG   Fomitiporia mediterranea: FOMMEDRAFT_21077
Entry
FOMMEDRAFT_21077  CDS       T03132                                 
Name
(RefSeq) WD40 repeat-like protein
  KO
K11360  transcriptional activator SPT8
Organism
fme  Fomitiporia mediterranea
Brite
KEGG Orthology (KO) [BR:fme00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:fme03021]
    FOMMEDRAFT_21077
   03036 Chromosome and associated proteins [BR:fme03036]
    FOMMEDRAFT_21077
Transcription machinery [BR:fme03021]
 Eukaryotic type
  RNA polymerase II system
   Coactivators
    SAGA/TFTC/STAGA complex
     FOMMEDRAFT_21077
Chromosome and associated proteins [BR:fme03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    SAGA complex
     FOMMEDRAFT_21077
SSDB
Motif
Pfam: Beta-prop_SPT8 WD40 WD40_WDHD1_1st WD40_Prp19 WD40_CDC20-Fz Beta-prop_EML_2 WDR55 Beta-prop_TEP1_2nd WD40_RFWD3 Beta-prop_EML Beta-prop_TEP1_C Beta-prop_WDR90_POC16_2nd Beta-prop_HPS5 EIF3I WD40_MABP1-WDR62_2nd Beta-prop_WDR75_1st Beta-prop_CAF1B_HIR1 Beta-prop_DCAF4 Beta-prop_Vps41
Other DBs
NCBI-GeneID: 18677973
NCBI-ProteinID: XP_007267756
JGI: Fomme1_21077
LinkDB
Position
Unknown
AA seq 612 aa
MAHSDSDDDVEVNDAFDFDARSSEADEVNEDDLFDADEASERAEETGSEEEEEDADAEAE
AEAEGEEDEEDEDESMDIAAVQKEIVPLQASLQPPPLPGPSIGHVKEQTPELQERPMSPA
QARRAKLVPALLNPRSYTVEAICAIAHPEPTHSLAASACMTHLLTGSQDGYVRDYDVFAA
VNGKTFLTAPQRAHCGVVEGTMKAGQLRMWWENPAFPTSADSVVEDHSRSPVTSLAMHSD
ALWALAGTEKGHVNLFTVRHEPGQFITAMDGHRNLVSSLAISHDEMGFFSAGWDGDVYQW
DLNTGHQVRKFTSTGAQVAVVAVRPLGPTLPPPTSTSAGGSNNNNARQQQDDDDAKSDGS
YDPLFDEPDEDEKDAAVGMTQAKTSGNEQQATSSTTPQAKTPAAAGGATYPRGPPVLDSA
SYGAFSPDVLLTASVDGSIVLWDRRVNTPGKGVGRLEMSSKTPPWCVSACWSADGGQVYA
GRRNCTVDVWDTRQYGQAVNGVPRLMKTLRNPTSSGAVSCVAAFPDGRHIAVASNDNIRL
WNASEGGEGTETGGGRGRSGVPFKIIPGHHGGIISQMLIDPAGRFMVSASSNRGWSGEST
RVVLIHDIKHLG
NT seq 1839 nt   +upstreamnt  +downstreamnt
atggctcacagcgactcagacgacgacgtcgaggtcaacgatgccttcgatttcgatgct
cggagtagtgaagcggacgaagtgaatgaggatgatttgtttgatgctgatgaggcttcg
gagcgtgctgaagagactggatcggaagaggaggaagaggatgctgatgctgaagctgaa
gcggaagcggagggagaagaggatgaggaggatgaggacgagagtatggacattgcggct
gttcagaaggaaatcgtaccgctgcaagcatcgttgcagccaccacctcttccaggaccc
tctataggtcatgtcaaggaacaaactccagaactacaagagcgtccaatgtcgcctgca
caggcccgacgcgcaaagctggttcctgctttactcaatccacgatcatacactgtagaa
gcaatctgtgctattgcacatccagaacctacacactcactggctgcttcagcatgtatg
acgcatctactcactggttcacaagacgggtacgtccgggactatgacgtcttcgcagca
gtaaacggcaagaccttcctcaccgcaccgcaacgtgcacactgcggtgtagtagaagga
acgatgaaagctggacaactccgaatgtggtgggagaacccggcgttcccaacgagtgcg
gactcagttgtcgaggatcactcgcgctcacctgtcacgagtctcgccatgcactcggat
gcgttgtgggctcttgcgggcaccgagaaaggtcatgtcaatttattcacggtgcgccat
gagcccggtcaatttattacagcaatggacggtcatcggaatctggtatcttccctagct
atctcgcatgacgagatgggcttttttagtgctggctgggatggagatgtgtaccaatgg
gacctaaacaccggccaccaggtccgaaaattcacatcgacaggtgcacaggtcgccgtc
gtcgcggtccggccattgggaccaactctacctccgccaacgtcgacaagcgctggaggg
tcgaataataataatgcaaggcagcaacaagacgacgatgacgcgaagtctgacggatca
tatgatccgttgttcgatgagcctgatgaagatgagaaggacgccgctgtggggatgacg
caagcgaagacaagcgggaacgagcaacaagcgacgagcagcaccacgccgcaggcgaag
accccagcagcagcgggaggagcgacatacccgcgtgggccgcccgtgctggactccgca
agttatggtgcgttctcgccggatgtgttactaacggcgtcagtagacggatcgattgta
ctctgggatcggcgagtgaacacacctggaaagggagtgggccgcctggagatgagcagc
aagacgcctccgtggtgtgtttcggcatgttggtctgcagatggtgggcaggtctacgcg
ggacgacgtaattgcacggtggacgtatgggacacgcgacaatatgggcaagctgttaat
ggagtgccgaggttaatgaagacgctccgaaatccgacgagctcaggtgcagtgtcctgc
gtcgccgcgttcccggatgggagacacatcgcggttgcttcgaacgacaacatccggttg
tggaacgcgagcgaaggcggagagggcaccgagacgggcggagggcgaggacggtctgga
gtgccatttaaaatcatccctgggcaccatggaggcattatctcgcagatgttgatcgac
ccggctggacggttcatggtcagtgcgagcagcaatcgcggctggtctggtgagtcgacg
cgggtggtgctcatccatgacatcaagcatctcgggtag

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