KEGG   Fomitiporia mediterranea: FOMMEDRAFT_22051
Entry
FOMMEDRAFT_22051  CDS       T03132                                 
Name
(RefSeq) WD40 repeat-like protein
  KO
K12857  Prp8 binding protein
Organism
fme  Fomitiporia mediterranea
Pathway
fme03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:fme00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    FOMMEDRAFT_22051
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:fme03041]
    FOMMEDRAFT_22051
Spliceosome [BR:fme03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    FOMMEDRAFT_22051
 Complex C
   U5 SnRNP specific factors
    FOMMEDRAFT_22051
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_2nd EIF3I WDR55 WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd ANAPC4_WD40 WD40_RFWD3 Beta-prop_EML NBCH_WD40 WDR90_beta-prop_4th Beta-prop_SPT8 Beta-prop_SCAP Beta-prop_RIG_2nd Beta-prop_HPS5 Beta-prop_TEP1_C Beta-prop_IFT140_1st Beta-prop_WDR35_TULP_N PQQ_3 TibC_1st
Other DBs
NCBI-GeneID: 18678122
NCBI-ProteinID: XP_007268965
JGI: Fomme1_22051
LinkDB
Position
Unknown
AA seq 369 aa
MAKREHSPPTDGILIKRARGATPPETQIAISSTGDDSKKGLIRSVKRTSGLEAPIVSLSG
SHSAEIMSCRFDPTGQNIAACSADRSVSLWRTYPPTSNYGYLPALHKAPILDLQWSLFSP
LLYTVSADHTLVMTDLSTGQRARKIRAHRGVVNALDRTLTGGAAVELIATAADDGFVHVW
EGGDEGGKQAVATFEVGCPVTSVCWSADGSTVYAGALDNEIHVFDLRKSAKVYSLTGHTD
TPTSLSLSPNGNFLLSPSFSSQVIIHDIRPFAPNPTRVHRTLLGSPAGFESTLLRASWSK
DDGGGRVAVGGADRMVCIWEVESGKILYKLPGHKGTVTSVDFHPKEPIVLTGSKDATMLL
GELEPGMSM
NT seq 1110 nt   +upstreamnt  +downstreamnt
atggcaaaaagggagcattccccaccaactgatggtatactcataaaacgggcgcgtgga
gcgacaccaccagaaactcagattgctatttcctcaaccggagatgatagtaaaaaggga
cttatacgctctgtgaagcgtaccagtggtcttgaagcgcccattgtcagcctttctggt
tcacattctgccgaaatcatgagctgtagatttgaccctacaggacaaaatattgcagcg
tgttctgcagatcggagcgtctctttatggagaacgtaccctccaacgtcaaactatgga
tatctgcctgctctacacaaagcgcctatcctcgacttacaatggtctcttttctcaccg
cttctctacacagtctctgcagaccacacgctcgtcatgacggacctctccacgggccag
cgggctcgaaaaattcgagctcacagaggcgtcgttaatgcacttgaccggacgctcacc
ggtggtgcggctgtagaactcattgcgactgcagcagatgatggcttcgtacacgtctgg
gaaggcggagacgaaggtggaaaacaggccgttgcaacgtttgaagttggttgccctgta
acgtctgtttgttggagtgcggatggctcgacggtttatgctggtgcattggataacgag
atccacgttttcgatcttcgaaaaagtgcgaaagtatactcccttacaggacataccgat
actccaacctcactttccctttcaccgaatggcaacttcctgctttccccgtctttctct
tcacaagtcatcattcacgatatccgccccttcgctccaaatccaacccgagtccatcga
actctcctcggatcaccagcaggattcgagagtactttattgcgggcatcgtggagtaag
gatgatggaggcggacgtgttgctgtgggcggtgcggatcggatggtgtgtatatgggaa
gtagaaagtggtaaaattctctacaaacttcctggacataagggtacagttacttctgtt
gacttccatccaaaggaacctattgtacttactgggagcaaggacgcaactatgcttctc
ggcgagctggaaccagggatgtcaatgtag

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