Fomitiporia mediterranea: FOMMEDRAFT_22997
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Entry
FOMMEDRAFT_22997 CDS
T03132
Name
(RefSeq) hypothetical protein
KO
K10631
E3 ubiquitin-protein ligase Topors [EC:
2.3.2.27
]
Organism
fme
Fomitiporia mediterranea
Brite
KEGG Orthology (KO) [BR:
fme00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
fme04121
]
FOMMEDRAFT_22997
03036 Chromosome and associated proteins [BR:
fme03036
]
FOMMEDRAFT_22997
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
fme03037
]
FOMMEDRAFT_22997
Enzymes [BR:
fme01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
FOMMEDRAFT_22997
Ubiquitin system [BR:
fme04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
FOMMEDRAFT_22997
UBL E3 ligases
FOMMEDRAFT_22997
Chromosome and associated proteins [BR:
fme03036
]
Eukaryotic type
Centrosome formation proteins
Centriole proteins
FOMMEDRAFT_22997
Cilium and associated proteins [BR:
fme03037
]
Primary cilia and associated proteins
Other primary cilia associated proteins
FOMMEDRAFT_22997
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-C3HC4
zf-RING_2
zf-C3HC4_2
zf-rbx1
zf-C3HC4_3
zf-RING_UBOX
zf-RING_5
zf-C3HC4_4
zf-ANAPC11
RING_XB3-XBAT31
zf-RING_10
Siva
Prok-RING_4
Motif
Other DBs
NCBI-GeneID:
18678257
NCBI-ProteinID:
XP_007270180
JGI:
Fomme1_22997
LinkDB
All DBs
Position
Unknown
AA seq
708 aa
AA seq
DB search
MSRTPSPRRSSSKRVKLENDVEDEVLADYGHEEEVDGDHCSICLQLLLDRTVIPECSHEF
CFECIVTWTDQSRRCPLCTRTIGPYLIHHIRSNFDYQKYHLPPLRTSPPPIQPLRRVRRS
SVQRVQEHRWGRRLRREQDVADELERAIDRRRWVYHNHLYVKHVASNTFTRYRPFPTPAQ
FSASQDYISRATIFIRRELRVWVNLDVEFLTTFILSLMKVIDIRSESAIKLLAEFLDMDH
PYYEGRRFPNAEHFAHELYSFLRSPYKSLSAYDMNAQYDTPEIVNKRANRDRKTASEKYI
INEPETPLGSELRHHTSGRSPPLDGNSCFGPRLKGQDTNHNIAKGSSGAPPFQYAENHVA
SDTADANTPLDDGRVNGSTEILTPPATDERFQASYAMGSSAIPSSYSELNSKGKQRASPI
KELEPRVTDGHSHGAERIESPRSAKEVQDPQSSTNTSVASSNILDLKQQEDLAEEQSNRK
STASQVHLRSRNPLLIAQAHLLDTQAKLKKKQPRMPSIGREDCPSEHRRSSRLDNESPSL
LSRITDPKQSAGRTGEAEIYFLPPNPLVVSQNDLHTHQMTEDLHMNLASPLEAERAVQAT
REHNTADTKVFPCSADRQKSSPDDPSRSIPNNSGRSGVRGGGRDPDLESKARTRARLKMK
LAVEKHLHAPHVRTSITDRNASEEQPRISENRERMLRAVLESRRRGGQ
NT seq
2127 nt
NT seq
+upstream
nt +downstream
nt
atgtcaagaactccgagtccgcgccgctcctcttcaaagcgcgtcaaattagaaaacgat
gttgaagacgaagttcttgctgactacggccatgaagaggaagtagacggcgaccactgt
agcatttgcttgcagctcctgcttgaccggactgtcatacccgagtgctctcacgagttc
tgctttgaatgtattgtcacctggactgatcagtcgaggcgctgtccgctgtgtactagg
accattggaccatacctaatccatcatattcgctctaatttcgactatcagaagtaccat
cttccgccgctcaggacatcacctccgccaatacaacctcttagacgggtgcgaagatct
tcggtacaacgggtgcaagaacatcgatggggaaggagattgcggagggaacaagacgtc
gcggatgaactcgaaagagcaatagataggagaagatgggtttaccataatcacctctac
gtaaagcatgtcgcttccaatacgttcacgcgttaccgtcccttcccaaccccagctcag
ttctctgcatctcaagattacattagtcgagctacgatatttattcgacgagagcttcgc
gtttgggttaatctcgacgtagaatttttgacaacgttcatcctttctctcatgaaggta
atagacatccgttccgaaagtgcaataaagctgttggccgagttcctggacatggaccat
ccatattacgaaggaaggcgtttccctaacgccgagcacttcgctcacgaactctacagc
ttcctccgatcaccgtataagagcttatccgcttatgacatgaacgcacagtatgacact
ccggagatagttaataaacgagcgaatcgtgatagaaagactgcatccgagaagtatatc
atcaatgaaccggaaactccgttgggatctgagttgcgccatcacacttcggggcggtct
ccaccgctcgacgggaacagctgctttgggccaagattaaagggccaggataccaaccat
aatatagccaaaggttcctcaggcgccccgccgtttcaatatgcggaaaaccatgtagca
agcgataccgccgatgctaataccccgctggatgacggtcgcgtcaatggatcaacggaa
atactgacacctccagcgacagatgaaaggttccaggcttcttatgctatgggttccagt
gcgattccctcatcgtactcggaattgaatagtaaaggcaagcaacgagcttcgccaatt
aaagaactggaaccgcgtgttacggatggtcacagtcacggagccgaaagaattgaatca
ccgcgaagtgcaaaagaagtgcaagatcctcagtcttctactaatacatccgtagcttcg
agcaatattctcgatctcaagcaacaagaagatttggccgaagaacaatcgaatagaaaa
tcaactgcatcgcaagtacatttacgtagccggaatccgctcctcattgcacaggcgcat
ttgttggacactcaggcaaaactaaagaagaaacaacctcgaatgccgtccatcggacgt
gaggactgcccatcggaacaccggcggtcgtcacgactcgacaatgaaagtccttcattg
ttgtcaaggataaccgatccaaagcagtctgcggggcggaccggcgaggcggaaatatat
ttccttccgcctaatccacttgtagtatcacaaaatgatttgcacactcatcaaatgact
gaagacctacacatgaacctagctagtcctctcgaagcagaacgcgcagtccaggctacc
cgagagcataatactgctgacaccaaagtgttcccttgctcggctgatcgtcaaaagtca
tctccagatgacccctcaaggtcaatccccaataacagtggtcgttctggtgtgaggggc
ggaggcagggacccagatctcgaatctaaagcgcgtactcgagctcggctaaagatgaag
ttggctgtggaaaagcatctgcacgcaccacatgttcgtacgagcattacggacagaaat
gcttccgaggagcagcctagaatatcggaaaatcgggagaggatgctccgagccgtgcta
gagagtagacggagaggtggtcaataa
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