KEGG   Fomitiporia mediterranea: FOMMEDRAFT_23520
Entry
FOMMEDRAFT_23520  CDS       T03132                                 
Name
(RefSeq) WD40 repeat-like protein
  KO
K11801  DDB1- and CUL4-associated factor 11
Organism
fme  Fomitiporia mediterranea
Brite
KEGG Orthology (KO) [BR:fme00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:fme04121]
    FOMMEDRAFT_23520
Ubiquitin system [BR:fme04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     FOMMEDRAFT_23520
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz Beta-prop_TEP1_2nd Beta-prop_EML_2 WD40_WDHD1_1st WD40_MABP1-WDR62_2nd WDR55 Beta-prop_WDR90_POC16_2nd EIF3I Beta-prop_EIPR1 Beta-prop_TEP1_C Beta-prop_CAF1B_HIR1 Beta-prop_SCAP Beta-prop_EML NBCH_WD40 WDR54 Beta-prop_RIG_2nd Beta-prop_IFT122_1st
Other DBs
NCBI-GeneID: 18678331
NCBI-ProteinID: XP_007270925
JGI: Fomme1_23520
LinkDB
Position
Unknown
AA seq 707 aa
MQNSRIPHEGAYEADDGDEAFQGMDAYVGDEGNGETMYGIQITRDEDDDDEDYTDEDEDE
GVGLDIDDLIEEIEEAGDLAAGEDDEESAAMQGLEDSQDPATRFDSLVQRILSAQADTEN
DTSSTNTLGRVLAFLRSGSTRLTVVPNARSRTTTEEVSDDDFTRTTGQANTAYNRRNWVQ
SWWKKPHTEPQPAGVALLMGGEFGRIGRKMHNLPDGSRNFSRILRERSMRIQPMPKQDLT
EYMVPNSAGAEVSAYQANVYSGQYSADSSFYYVCCKDFNLHVYDTTAMPSKEAHNDRRHG
HRTRMKVHKSIKGIPEGWTIPDSHLSSDNERLIYSSMSPTVYMVKTLEYDSTQVAINFAD
AGRRSYGWGYGDDTCIWSCRFSADGNEVIAGGGGKIFVYDLLADRRTVKISAHFDDVNSC
CWADQGSNVLVSASDDTFIKVWDRRSLGSSTRPSGVLIGHTEGITNVSAKGDGRYVISNG
KDQALRLWDLRKMTPNSEYNKVKDTHYGLEGFDYRYVENDRPQRRPAHPKDCSIMTYRGH
SVLRTLIRCHFSPAETTGGRYIYSGSFDGRIHVWSLDGRVVQILDRSETLPLSFDYSGPE
LPPKHSGSPCVRDVTWHSREPVMLSAAWGSHGTSSVARHEWKGLTKMNHNLEDWVEKMSS
EGRERHRNGVPLRRSQRFARMSGRLPGSLYDDDDDEYDEDYHDYDYY
NT seq 2124 nt   +upstreamnt  +downstreamnt
atgcagaactcgcggattccccacgaaggtgcatatgaagcagatgatggagatgaggcc
tttcaaggcatggatgcctatgtcggagacgaaggaaatggtgaaactatgtatggcata
cagataactagggacgaagatgacgatgacgaagattatactgacgaagacgaggatgaa
ggtgtggggttagatatcgatgatttaatagaggagatagaggaagctggtgacctcgcc
gcaggagaggacgacgaggagtctgctgctatgcaaggacttgaagattctcaggatcct
gcaactcgcttcgactctcttgttcaaagaatactttcagcccaggctgacacggagaac
gacacctcatcgaccaatacactcggtcgcgtcttagcgttccttcgatccggttctaca
aggctaacagtggttcccaatgcgaggtctaggactacgacggaagaagtatcggatgat
gacttcacgcgcacgacgggtcaggccaacaccgcatataaccgacggaactgggtacag
tcatggtggaagaaacctcacacggaacctcaacccgctggggttgctctgctaatgggc
ggagagtttgggcgcatcggacgaaagatgcataatctgccagacggcagtcggaacttt
tcgcgtattttaagggagaggtcaatgcgcattcagccaatgccgaagcaagacttaaca
gagtatatggtaccaaactctgccggtgctgaggtttctgcataccaagcaaacgtgtac
tctggtcaatatagtgcagattcctccttctattacgtttgctgcaaagatttcaatctt
catgtatacgatacaactgccatgccttcgaaggaggcgcacaacgaccgtcgacatgga
catagaacacggatgaaagttcataaaagtataaaggggattcccgaaggatggacgatc
ccggattcacatttgagttccgacaacgagaggttgatttattcttctatgagccctacg
gtatacatggtcaagactctggaatacgactccacccaagttgcaatcaattttgctgat
gcaggccggaggtcctacggctggggatatggggacgacacatgtatatggagttgtcgc
ttttccgctgatgggaatgaggtcatcgcgggaggaggggggaagatattcgtatacgac
ctgttggcagacagacggacagtcaaaatatctgcgcactttgacgatgtcaatagctgt
tgttgggctgaccaaggcagtaacgtattggttagtgcttctgacgacaccttcatcaaa
gtttgggatcgtcgatcattgggttcatcaacacgcccctctggagttctcataggacat
acagagggcattacaaacgtttcggcaaaaggcgatggacgatatgtcatttctaatggg
aaagatcaagcactacgattatgggatttgagaaaaatgacgcccaattcagaatataac
aaagtcaaggatacacattacggtctagaaggctttgactacagatacgtggaaaacgac
agaccacaaaggcggcctgcacatcctaaggattgtagtatcatgacttaccggggacat
tccgttctgcgaaccctgattagatgccacttcagtccagcggagactactggaggccgt
tacatttactctggatcgttcgatggtcgaattcacgtctggtcattggatggtcgtgtt
gtacaaattctcgatcgttcggaaacgcttccattaagctttgattactctggccctgag
ctacccccgaaacatagcggcagtccttgcgtgcgcgacgttacctggcactcgcgtgag
cctgtcatgcttagcgcggcatggggttctcacgggactagctcagtggcacggcacgag
tggaaaggtttgacaaagatgaatcataatttggaagattgggtagaaaagatgtccagt
gagggaagggaaaggcacaggaatggtgtaccattgagacgatcacaacgatttgcccgc
atgtcaggtcgtctccctggatcattatacgatgacgatgacgatgaatacgacgaggat
taccatgactatgactattactaa

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