Fomitiporia mediterranea: FOMMEDRAFT_24314
Help
Entry
FOMMEDRAFT_24314 CDS
T03132
Name
(RefSeq) DEAD-domain-containing protein
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
fme
Fomitiporia mediterranea
Pathway
fme03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fme00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FOMMEDRAFT_24314
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fme03019
]
FOMMEDRAFT_24314
03036 Chromosome and associated proteins [BR:
fme03036
]
FOMMEDRAFT_24314
Enzymes [BR:
fme01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FOMMEDRAFT_24314
Messenger RNA biogenesis [BR:
fme03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
FOMMEDRAFT_24314
mRNA degradation factors
5'-3' decay
Decapping complex
FOMMEDRAFT_24314
Chromosome and associated proteins [BR:
fme03036
]
Eukaryotic type
Gene silencing
piRNA pathway
FOMMEDRAFT_24314
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
AAA_19
NA-iREase2
CusS
CMS1
Motif
Other DBs
NCBI-GeneID:
18678450
NCBI-ProteinID:
XP_007272025
JGI:
Fomme1_24314
UniProt:
R7SG66
LinkDB
All DBs
Position
Unknown
AA seq
533 aa
AA seq
DB search
MSGVTSPSASSSTGTGSGQDWRAGLRAPPKDNRPQTEDVTATKGMEFEDMFLRRELLMGI
FEAGFERPSPIQEEAIPVALSKRDVLARAKNGTGKTAAFVIPTLQQLDVSKNRIQALLLV
PTRELALQTAQVCKILGKHLGANVMVTTGGTTLKDDIMRLSEPVHVLVGTPGRILDLASK
GVADLSECPVFVMDEADKLLSPEFTPVMEQLLSFLPESRQVMLFSATFPMIVKDFKDKHM
DSPYEINLMDELTLRGVTQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSTNRVELLAK
KVTELGYSCFYSHAKMLQSHRNRVFHDFRNGVCRNLVCSDLLTRGIDIQAVNVVINFDFP
KNSETYLHRIGRSGRYGHLGLAINLITYEDRFNLYKIEQELGTEIQPIPAQIDRSLYVAP
AGGDEPSNQAEQQLQQQVQKQQQQQQQQQLQKQQAVRQAMSAQVAPQPQQIIYQSNGQAP
QSQQRVVPNGPMPAQLQQQQLAAAAARNQQYQAYAQVQPGVAAPRPGAQPVRR
NT seq
1602 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggcgttacaagtccctcagcatcatcatcaactggaactggtagtggccaggac
tggcgggctggtctacgcgcaccaccaaaagacaaccgcccgcagacggaagatgtaaca
gcaaccaagggaatggaattcgaggacatgttcctccggcgtgagctccttatgggcatt
ttcgaggccggcttcgaacggccgtcgcctatccaagaagaagcaatccctgtagccctc
agcaagcgtgacgtcctcgcccgcgcgaagaacggtacaggtaaaactgctgcattcgtt
atacccaccctccagcaactcgatgtcagcaagaataggattcaagcgcttttgctcgta
cctactcgtgagctggcgctgcagacagcgcaggtgtgcaaaatcctcggtaagcacctt
ggtgcaaatgtcatggttacgacaggtgggacgacgctgaaggatgatatcatgcgtctg
tcggagcccgttcatgtcctagttggtacacctggccgtatccttgacctcgccagtaag
ggtgtcgcagaccttagcgagtgccccgtgtttgtgatggatgaggcggataagctcctc
tctcccgaattcacaccggtgatggagcagttactctctttccttcctgaatcgcgtcag
gttatgcttttcagcgcgaccttcccaatgattgttaaagatttcaaggataaacacatg
gactcgccgtatgaaattaatcttatggatgaacttactctacgtggtgtgacacaatat
tacgccttcgtcgaagagcgacagaaggtccattgtttaaatactttattctcaaagctt
caaatcaaccaatccattatcttctgtaactcaacgaaccgagtcgaacttctcgcaaaa
aaggtgaccgaactcggctattcatgcttctattcgcacgcgaagatgctgcaatcgcac
cgtaaccgtgtgttccacgatttccggaatggtgtctgccgcaatctcgtctgctcagac
ttgctcacccgtggtatcgatatccaggcggtcaacgtcgttatcaactttgatttcccg
aagaacagtgagacttaccttcatcgtattggtcgttctggtcgttatggtcacttgggt
cttgcgattaacctcatcacgtacgaggatcgattcaatctatataagattgagcaagaa
ttaggaacggagattcaacctattccagcccagattgacaggagtctgtacgttgctcca
gcaggaggtgacgagccgtcgaaccaggcagagcagcaattgcaacaacaggtacaaaag
caacagcaacaacagcaacaacagcagttgcagaaacagcaggctgtacgccaggcgatg
tctgcacaggttgctccacaaccgcagcagattatttatcaaagtaatgggcaggcgcct
cagtcccaacagagggtcgtccctaatggtcccatgcctgcgcaattgcagcagcagcaa
cttgcggcagcggctgcacgtaaccagcagtaccaggcatatgcgcaagttcaaccaggt
gttgctgcccctcgtcctggagcgcagcctgtgcgccgatag
DBGET
integrated database retrieval system
