KEGG   Fomitiporia mediterranea: FOMMEDRAFT_72009
Entry
FOMMEDRAFT_72009  CDS       T03132                                 
Name
(RefSeq) ARM repeat-containing protein
  KO
K12828  splicing factor 3B subunit 1
Organism
fme  Fomitiporia mediterranea
Pathway
fme03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:fme00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    FOMMEDRAFT_72009
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:fme03041]
    FOMMEDRAFT_72009
   03036 Chromosome and associated proteins [BR:fme03036]
    FOMMEDRAFT_72009
Spliceosome [BR:fme03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    FOMMEDRAFT_72009
 Complex B
    FOMMEDRAFT_72009
 Complex C
   U2 SnRNP specific factors
    FOMMEDRAFT_72009
Chromosome and associated proteins [BR:fme03036]
 Eukaryotic type
  Chromatin remodeling factors
   B-WICH complex
    FOMMEDRAFT_72009
SSDB
Motif
Pfam: PPP2R1A-like_HEAT TOR1L1_N SF3b1 HEAT_EZ HEAT_EF3_N HEAT_ECM29 HEAT HEAT_2 Vac14_Fab1_bd Htt_N-HEAT_1 XMAP215_CLASP_TOG Adaptin_N DUF3110 DUF3730
Other DBs
NCBI-GeneID: 18679545
NCBI-ProteinID: XP_007261375
JGI: Fomme1_72009
LinkDB
Position
Unknown
AA seq 1149 aa
MSPPGSPRLVDSYTAPKEVLQEFHELAEEENFDPFAETSSKRQIAARQSDYHNRRFNRQA
NESADAFKAAEEGMEVDGGYKDAMRLQRLEKEEERVRRAIEEKEKKDREEGIDKAALDKT
PPRKELEEAEKILQSVAASAKRKRRWDVPEGSEDKENQDVKPDTGEWSKESLEAAAPKKR
RSRWDATPADVNVQETPKRSRWDQVAPPEPAQPMEKIIMNAPGINLEERTNRYLTDEELN
ALLPSQGYAIVPPPPGYAPMRAPPQLTGYAPEFAGFHIQEGSDAAAAAAAAGLAPELPTE
IPGVGNLAFFKAEDAQYFAKIMKEEDETQLTVEEMKERKIMRLLLKIKNGTPPVRKTALR
QITDKAREFGAGPLFDKILPLLMERTLEDQERHLLVKVIDRVLYKLDDLVRPYVHKILVV
IEPLLIDEDYYARVEGREIISNLSKAAGLAHMISTMRPDIDHADEYVRNTTARAFSVVAS
ALGIPALLPFLKAVCRSKKSWQARHTGIRIVQQIAIMMGCAVLPHLRNLVDAVAHGLTDE
QQKVRTMTALALAALAEAAAPYGIESFDNVLKPLWLGIRLHRGKGLAAFLKAIGFIIPLM
DPEYASYYTKEVTVILIREFQTSDEEMKKIVLKVVKQCAATEGVTPQYIKQDILPDFFKS
FWVRRMALDRRNYKQVVETTVELAQKAGVAEIVGRVVNDLKDEAEPYRKMVMETITKVIA
SLGAADIDERLEVRLVDGIIYSFQEQTTEDQVMLDGFGTVVNALGIRVKPYLVQIVSTIL
WRLNNKSAKVRQQAADLTSRLAVVIKQCGEDQLLSKLGLVLFEQLGEEYPDTLGSIIAAV
GAIANVVGMTQMNPPVKDLLPRMTPILRNRHEKVQEASINLIGRIADRGAEFVPAREWMR
ICFELLDLLKAHKKAIRRAAVNSFGYIAKSLGPQDVLSVLLTNLRVQERQSRVCSTVAIA
IVAETCGPFTCIPAILSEYRTAELNVRTGCLKALSFVFEYVGPQSAYYCDSVVTMLEDAL
TDRDLVHRQTASTIVKHLALGVAGLGCEDSMLHLMNLVWPNCFETSPHVIGAVMEAIEAM
RVTLGPGVLLSYTLQGLFHPARKVREVYWRIYNALYLGAADALVPFHPDLSELSEGQNMY
DRAPLQMFI
NT seq 3450 nt   +upstreamnt  +downstreamnt
atgtctcctcccggctcgcctcgtctcgttgattcatatactgccccaaaggaagtactt
caggagttccatgagcttgctgaggaggagaatttcgacccgttcgcggaaacctcttca
aagcgccagatagccgcccgccagtctgactaccataaccgccgctttaatcgccaggca
aatgagtcggccgacgcattcaaggctgcagaggagggaatggaggtggatggtggttat
aaagacgcaatgcggctgcaacgactagagaaagaggaggagcgagtcagacgagctatt
gaggaaaaggagaagaaggatagggaggaggggattgacaaggctgctctcgataagacg
cccccgaggaaggagcttgaagaggcggagaaaattcttcaatctgtagctgctagtgcg
aagcggaaacgcagatgggacgtcccggagggttctgaggataaggagaatcaggatgtc
aagcctgatactggggaatggtctaaagaatctcttgaagctgccgctccgaagaaacga
cgctcccgctgggacgcaacacctgcggatgtcaacgttcaagaaacgccgaagcgttca
cgctgggatcaagttgcccctcctgaacccgcgcagccaatggagaagatcattatgaac
gctcctggaataaatcttgaggagagaaccaatcggtaccttacggacgaagagctaaat
gctctccttccttcgcaagggtatgccattgtccctcctccaccgggttatgcaccgatg
cgtgctccgccacagcttactggttatgctcccgaatttgctggattccatatccaggag
ggctctgatgctgcggcagctgcagctgcagccggtcttgctcccgagcttcccactgaa
attccgggcgttgggaacctcgctttcttcaaggctgaggatgcacaatatttcgccaag
atcatgaaggaagaagacgagacgcagctcactgttgaagaaatgaaagagcgaaaaatc
atgcgtttactccttaagatcaaaaatggtacaccgccagtgcgtaagactgcattgcga
cagatcacggacaaggctcgtgaatttggtgctggccctctgttcgacaagattttacct
ctgctcatggagcgtaccttggaggaccaggagaggcatctacttgtcaaggtcattgat
cgagttttgtacaagcttgatgaccttgttcgtccgtacgtacacaagatcctcgtagtc
atcgagccgctgctcattgacgaggattattatgctcgtgttgaaggccgtgagattatc
tctaacctttccaaagccgccggtctcgcacatatgatctcgactatgcgtcctgacatt
gaccacgccgacgaatacgtccgaaacacgacagcgcgtgccttctctgtcgtcgcatct
gcgcttggtatccctgcactacttccgttcctcaaggctgtctgtcgcagtaagaagtcg
tggcaggctcgtcatactggtatccgtattgtccagcagattgctatcatgatgggatgt
gctgtgctcccgcacttgcgtaatctcgtggacgccgttgcacatggtctgaccgacgaa
caacaaaaggtccgaactatgaccgcccttgccctcgccgccctcgctgaagcagctgct
ccatatggcattgaatcattcgacaatgtacttaaaccgctttggctgggtatccgtctg
cacagggggaagggtttggcggctttcctgaaggcaattggatttattatcccactcatg
gacccggaatatgcttcctattatacaaaggaagttacagtcattcttatccgagagttc
cagacatcagatgaggagatgaagaagattgtccttaaagtggtgaaacagtgcgctgca
accgaaggtgttacgccgcagtacatcaagcaggatattcttccggatttcttcaagtcc
ttctgggtacgtcgcatggcactcgaccgccgcaactacaaacaggtcgtcgagacaact
gtcgagctggcgcaaaaagcgggtgtggcagagattgtcggacgcgttgtgaacgacctc
aaggacgaagcagaaccataccgaaagatggttatggagacaatcacgaaagtcatagcg
agcttgggtgcagcagacatagatgaacgtcttgaggtccgcctcgtcgacggcattatt
tattcgttccaggagcaaacgacggaggatcaagtcatgttggatggtttcggtacagtc
gtcaatgcccttggaattcgagtgaagccatatctcgtacagattgtctcaaccatcctt
tggcgactgaacaacaagagcgcaaaggttcgacagcaggccgcagatttgacgagccga
ctcgcggtcgtcatcaagcaatgcggtgaagaccagcttttgagtaaacttggtttagta
ttgttcgagcagcttggagaggagtacccggatacactgggaagtatcatcgcagctgtt
ggagccattgccaatgtcgtaggtatgacacagatgaacccgccagtaaaagatttattg
ccacgtatgactcctattcttcgaaatcgacacgaaaaggtgcaggaagcatctatcaac
ttaatcggtcgtattgctgatcgtggtgccgagttcgttcctgcgagagaatggatgcgt
atttgctttgaacttctggaccttctgaaagcccacaagaaagctattcgacgagcggct
gtgaactcctttggttacattgccaagagtttgggtcctcaggacgtactttctgtcctc
ttaaccaatctacgtgtacaggaacgacagtcgcgtgtgtgcagtaccgtagccattgct
atcgtcgctgagacttgcggacccttcacttgcatccctgcgatcttgtcagaatatcgc
acagccgagttgaacgttcgaacaggttgtctaaaagcactttcattcgtctttgaatac
gttggtccccagtcagcatattactgtgattcggtcgtaactatgcttgaggatgcatta
actgaccgggatctcgtccatcgacaaaccgcgagtacgattgtcaagcatttggctctt
ggcgtcgccggtcttggctgcgaggactcaatgttgcacctgatgaacctcgtgtggccg
aattgtttcgagacatccccacatgtcatcggagctgtgatggaggcgattgaagcgatg
cgggtgacgcttggacccggcgtactcctgagctacacgctgcagggattgttccaccca
gcacgcaaggtccgtgaagtgtactggcggatatacaatgccttgtacctcggtgctgca
gatgcgcttgtaccgttccatcccgacttatcagaactgagcgagggtcaaaatatgtac
gatagggcacctctgcagatgtttatttga

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