Fomitiporia mediterranea: FOMMEDRAFT_72721
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Entry
FOMMEDRAFT_72721 CDS
T03132
Name
(RefSeq) P-loop containing nucleoside triphosphate hydrolase protein
KO
K10756
replication factor C subunit 3/5
Organism
fme
Fomitiporia mediterranea
Pathway
fme03030
DNA replication
fme03410
Base excision repair
fme03420
Nucleotide excision repair
fme03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
fme00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FOMMEDRAFT_72721
03410 Base excision repair
FOMMEDRAFT_72721
03420 Nucleotide excision repair
FOMMEDRAFT_72721
03430 Mismatch repair
FOMMEDRAFT_72721
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
fme03032
]
FOMMEDRAFT_72721
03036 Chromosome and associated proteins [BR:
fme03036
]
FOMMEDRAFT_72721
03400 DNA repair and recombination proteins [BR:
fme03400
]
FOMMEDRAFT_72721
DNA replication proteins [BR:
fme03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
FOMMEDRAFT_72721
DNA Replication Termination Factors
ELG1-RFC complex
FOMMEDRAFT_72721
Chromosome and associated proteins [BR:
fme03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
FOMMEDRAFT_72721
DNA repair and recombination proteins [BR:
fme03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
FOMMEDRAFT_72721
Check point factors
HRAD17(Rad24)-RFC complex
FOMMEDRAFT_72721
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac_C
AAA
DNA_pol3_delta2
Rad17
AAA_14
DUF815
AAA_assoc_2
AAA_11
AAA_30
AAA_22
RuvB_N
RCF1-5-like_lid
AAA_16
AAA_24
ResIII
DEAD
AAA_19
AAA_5
AAA_3
AAA_28
Viral_helicase1
AAA_33
ATPase_2
AAA_7
Methyltransf_31
nSTAND3
Mg_chelatase
bpMoxR
Motif
Other DBs
NCBI-GeneID:
18679565
NCBI-ProteinID:
XP_007261485
JGI:
Fomme1_72721
LinkDB
All DBs
Position
Unknown
AA seq
348 aa
AA seq
DB search
MADADATHSFNFKGKGKETYAEYTQDDNLPWVEKYRPVTLDDVVSHKDITSTIEKFIEKN
RLPHLLFYGPPGTGKTSTILAVARRIYGPDYRKQILELNASDDRGIDVVREQVKQFAETR
TLFSKGFKLIILDEADMMTQAAQAALRRVIEQYTKNVRFCIICNYVNKITPAVQSRCTRF
RFSPLPIKEVERRLEGVIEAESVKLTPDGKDALLKLSKGDMRRALNVLQACHAAYDVIGE
TEIYNCTGSPQPKDIETVVTSMLGDEFTTSYEMISALKIERGLALQDLITGAYDYIETIE
FGSQARVYLLDQLASTEYRLSTGGSEKIQLTALLGAFKNAVELSKKDK
NT seq
1047 nt
NT seq
+upstream
nt +downstream
nt
atggcagacgctgacgcgactcacagttttaatttcaaaggaaaggggaaggaaacttat
gcagaatacacgcaagatgacaacttaccatgggttgagaaatatcgccctgttacgctt
gatgacgttgtatcgcataaggatatcacgagcacaatcgagaaattcattgagaagaac
cgtcttccccatctccttttctacggacctcccggaactggtaaaacttccacgatacta
gctgttgctcgtcgtatctatggaccggattatcggaaacagattctagagctcaatgca
tccgatgaccgtggcattgacgtcgtgcgggagcaagttaagcagttcgcggaaactcga
accttgttttcgaagggcttcaagctcattatattggatgaggcggacatgatgacacaa
gctgcgcaggctgctctccgtcgcgtaatcgaacaatacacaaagaacgtccgtttctgc
attatctgcaattatgtcaacaaaattacgccagcagtgcaaagtcgttgtactcgtttt
cgtttcagtccgttgccaattaaggaagtggaacgtcgtctggaaggggtcattgaagct
gaaagtgttaaattaacgccggatggcaaggacgcactcttgaaactttccaaaggcgat
atgcgccgcgctctaaatgttttacaagcatgccatgcagcctacgatgtaatcggagaa
accgaaatctataactgcactggcagtcctcaaccgaaggacattgagaccgttgttacc
tccatgcttggggatgaattcacgacttcgtatgaaatgatatctgctcttaagatcgaa
cgtggactggccctccaggaccttatcacaggagcttatgattacatagagacgattgaa
ttcggttcgcaagctcgagtttatctgcttgatcaactagcttcgacagaataccgcctc
tcaactggtggaagcgagaagatacagttgacggcactccttggtgcttttaagaatgct
gtcgagctttcaaagaaggacaagtaa
DBGET
integrated database retrieval system
