KEGG   Fomitiporia mediterranea: FOMMEDRAFT_82312
Entry
FOMMEDRAFT_82312  CDS       T03132                                 
Name
(RefSeq) RNA polymerase Rpb6
  KO
K03014  DNA-directed RNA polymerases I, II, and III subunit RPABC2
Organism
fme  Fomitiporia mediterranea
Pathway
fme03020  RNA polymerase
fme03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:fme00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    FOMMEDRAFT_82312
  09124 Replication and repair
   03420 Nucleotide excision repair
    FOMMEDRAFT_82312
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:fme03021]
    FOMMEDRAFT_82312
   03400 DNA repair and recombination proteins [BR:fme03400]
    FOMMEDRAFT_82312
Transcription machinery [BR:fme03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol I, II, III common subunits
     FOMMEDRAFT_82312
  RNA polymerase III system
   RNA polymerase III
     FOMMEDRAFT_82312
  RNA polymerase I system
   RNA polymerase I
     FOMMEDRAFT_82312
DNA repair and recombination proteins [BR:fme03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      FOMMEDRAFT_82312
SSDB
Motif
Pfam: RNA_pol_Rpb6 DUF4549
Other DBs
NCBI-GeneID: 18680068
NCBI-ProteinID: XP_007265239
JGI: Fomme1_82312
LinkDB
Position
Unknown
AA seq 127 aa
MDGENAEGAQVNGDVTANEVDHEQDMNGEAAGSQEAQQPLPIQGERQPNKVRITTPYLTK
YERARVLGTRALQISMNAPVLVQLDGETDALQIAIKELSQRKIPLIIRRYLPDGSFEDWS
VAELISE
NT seq 384 nt   +upstreamnt  +downstreamnt
atggatggagagaacgctgaaggcgcacaagtcaatggagacgtaacggcgaatgaagtg
gatcacgagcaggatatgaacggcgaggcagcgggttcgcaagaagcgcaacagccacta
cctatacagggcgagcgacaaccgaataaagtgcgcattacgacgccgtacttgacgaaa
tatgagagggctcgtgtattagggacgagggcgctgcaaatcagcatgaacgctcctgta
ctagtccaacttgacggggagacagatgcacttcagattgcgataaaggagctgtcgcag
cgaaaaattccgcttattattcgacggtatcttccggatggtagtttcgaggattggagc
gtagcggaacttatcagcgaatga

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