Fomitiporia mediterranea: FOMMEDRAFT_82831
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Entry
FOMMEDRAFT_82831 CDS
T03132
Name
(RefSeq) DEAD-domain-containing protein
KO
K13181
ATP-dependent RNA helicase DDX27 [EC:
5.6.2.7
]
Organism
fme
Fomitiporia mediterranea
Brite
KEGG Orthology (KO) [BR:
fme00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
fme03041
]
FOMMEDRAFT_82831
03009 Ribosome biogenesis [BR:
fme03009
]
FOMMEDRAFT_82831
Enzymes [BR:
fme01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FOMMEDRAFT_82831
Spliceosome [BR:
fme03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
FOMMEDRAFT_82831
Ribosome biogenesis [BR:
fme03009
]
Eukaryotic type
Pre-60S particles
Helicases
FOMMEDRAFT_82831
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
DGCR6
Motif
Other DBs
NCBI-GeneID:
18680093
NCBI-ProteinID:
XP_007265516
JGI:
Fomme1_82831
LinkDB
All DBs
Position
Unknown
AA seq
782 aa
AA seq
DB search
MALDDLIMTIDSDAEDTVEEPRKPAKDTLNPEFTFDVTGDVYDEVLNGQDGLGDLVKGSK
REPVSVDDIIARRKLTDASNKRKRAYDTEDNDDDDEDEDEDEGEGDEEEDLGDEELKSDD
PLATSEDEEDDADQLSEAELDDETDNASDSDGSSGTEEETQAEKERKAAYFASPDDPSVS
GQVHTSFTTMSLSRPLLKALTALGFSTPTPIQVATIPVALLGKDVVGNAVTGSGKTAAFM
IPVLERLMYRERGKNKAAVRCVVLVPTRELGVQCVDVAKKLSAFMDVRISLIVGGLSLKS
QEAELRTRPDIVIATPGRLIDHLRNSPSFGLETLDVLILDEADRMLSDGFADELKEIIQA
CPTSRQTMLFSATMTDDVDALVRMSLNRPVKLFVDPKRSTARGLIQEFVRVRAGKEAERA
ALLVALCKRTFKQGVIVFFRSKKLAHQMRVVFGILGMKAEELHGDLTQEQRLRALQLFRD
GAVDFLMATDLASRGLDIKGIEAVVNYDMPGQLAQYLHRVGRTARAGKKGRSVTLVGEAD
RKILKAAIKHASDVDKVRHRTIPSDQVSIWAKRLAEINDEITEVLKEEKEEKALRLAERE
LKKGENMIEHEKEIFSRPARTWFQSEKEKLNAKEISKKQYEIAAGATSPSKGKNKEVQAD
AKPKRDKFAGLSRRAKRRKLALEEGAAETTAVRAAVRNAKKAGRPTKIGMPEPKQQNPAK
SKGSGKDRRGKAGRVTGRKGVFDNEMGGKRKPSINEGARANRTDRIGGMGKKGPKGKGKG
KR
NT seq
2349 nt
NT seq
+upstream
nt +downstream
nt
atggcactcgatgaccttattatgacaattgattcggatgcggaagacactgttgaggag
ccaaggaaacctgcaaaagatacgctgaacccagagttcacgttcgacgtgactggggac
gtatacgacgaggtactaaatgggcaggatggtctgggagacttagttaaaggctcaaaa
cgggaacctgtttcggtagacgacattattgcgcgaagaaagctgaccgatgcttcgaat
aaacgaaagagagcatatgacacggaagataatgacgacgatgatgaagacgaggacgag
gacgagggcgagggcgatgaagaagaagatctcggtgatgaggagttaaagagcgacgat
ccattagcaacatcagaggatgaagaggacgatgcagatcaactctctgaagccgagtta
gacgacgaaacggacaatgcctcagactcagatggctcctctggcactgaggaagaaact
caagccgaaaaggaacggaaagcagcgtatttcgcttctccagatgacccttcagtgtct
ggccaagtacatacatcttttacgacaatgtctctttctcgacccctcctaaaagctctt
actgcacttgggttttcgacaccaacacccatccaagttgccactatccctgtcgctctt
ctggggaaggatgttgtcggaaacgcggtcactgggtccggaaagacagcggcgttcatg
attcctgtccttgagcgtctaatgtaccgtgagcgcgggaagaacaaagcggcggtccgc
tgtgttgtgcttgttccgacgcgcgagcttggtgtgcagtgtgtagacgttgcaaagaag
ctctctgcattcatggacgtacgaatatctttgatagttggtggactttctcttaaatcg
caggaagcagagcttcgaacgcgtccggacatcgttatcgcaacacctggccgacttatc
gaccatctgcgtaactccccttccttcgggctggagacccttgatgtgctcattctggac
gaggccgatcgaatgctttccgatggattcgcagatgaattgaaagaaatcatacaagcc
tgtccaacttcgcggcagacgatgcttttttccgcaacgatgacggacgacgtggatgca
cttgtgcggatgtcactcaaccgaccagtgaagctatttgtggatccgaaacggagcacc
gcacgcgggcttatccaggaatttgtccgcgttcgtgctggaaaagaggccgagcgcgcg
gcgttgcttgttgcattgtgtaaacggacgtttaagcagggtgttatcgttttcttcagg
agtaagaagcttgcgcaccaaatgcgagttgtgttcgggattctcggtatgaaggcggag
gaattacacggcgaccttactcaggaacagcgtcttcgcgctctgcagctgttccgtgat
ggtgcggtggattttttaatggcaacggatctcgcctctcggggtcttgacatcaaaggt
attgaggcggttgtcaactacgacatgcctggtcaactggcacaatatcttcatcgagtt
gggcgaacggctcgtgccggaaagaaaggacgatcggtgaccttagttggagaggctgac
cggaagatactcaaagctgctatcaaacacgcctctgacgtagacaaggtccggcatcgt
acaatcccgtccgatcaggtgtcaatatgggcgaagcgactggcggagatcaacgatgag
ataacagaggtattaaaggaagagaaggaagagaaggcgttacgattggcggaaagagag
ctgaaaaagggagagaatatgattgaacatgagaaggagatcttttctcggcctgcacga
acgtggtttcaatccgagaaggaaaagctcaatgcaaaagaaattagcaagaagcagtat
gagatagctgcaggtgccacttctccgtcaaaagggaagaataaagaggtgcaggcagat
gcaaagcctaaacgggataaatttgccgggctttcgcgccgggcaaagcgaagaaagctc
gcacttgaagagggtgcagcggaaaccacagctgtgcgtgcggctgtccgaaacgcgaag
aaggctggacgaccaacgaaaattggcatgccggaaccaaaacaacagaacccggctaaa
tcaaaaggctcagggaaggacaggagggggaaagcaggtcgggtgaccggtcggaaagga
gtatttgacaatgagatgggagggaaacggaaaccaagcataaacgaaggtgccagagcc
aataggaccgatagaatcgggggtatgggcaagaagggtccaaaagggaaggggaaaggg
aagcggtga
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