Fomitiporia mediterranea: FOMMEDRAFT_83331
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Entry
FOMMEDRAFT_83331 CDS
T03132
Name
(RefSeq) nucleoporin-interacting protein NIC96
KO
K14309
nuclear pore complex protein Nup93
Organism
fme
Fomitiporia mediterranea
Pathway
fme03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
fme00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
FOMMEDRAFT_83331
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fme03019
]
FOMMEDRAFT_83331
Messenger RNA biogenesis [BR:
fme03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
FOMMEDRAFT_83331
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Nic96
IML1
Motif
Other DBs
NCBI-GeneID:
18680130
NCBI-ProteinID:
XP_007266031
JGI:
Fomme1_83331
LinkDB
All DBs
Position
Unknown
AA seq
869 aa
AA seq
DB search
MADLSALLEASKALASNLARPDLPAVNLSLDQIEAQSRRLVSRQPGTSTDNDRANYILAQ
AHVDAPALANSIAHLNTSTTFSPLQPLHDTDVSGFLRHAHEQNLISTIEEGRRETQEDFY
RVLEDRSRRDWEARKKRIFEELGGRASGVEGKANGELRKSLRASTSLAHSTAGPLSNNLQ
MQSKMLAYDHAITELNKARLRGTSFPIVHTLFQIARDISTDVSTMVLSQIPQLFHTLTKI
TAEPPALPPLEHSGAHILNAPRFERKYARVYLGDPEAREAVQLRMQIAQGAKEALEEQYW
DVLERTVQARPADARLGGDPSVANHVRAFLLLRYYRGGEWEERIELVGSQPLWAKLFYLV
RTGHLKDARDEAKGHQKALDSREPGFFNYFRLWIDTPNGRLPKTARDHLQSTYNTHMLNS
ATADPFKLALFRLMGKLDPARRSIPLVTATAEDWLWFQLAMIDEEEAGGLRALAEVLMSY
GERHFEGTPNQRRLGMWANVLLMCGQFERAVAALDENPDTKVEAVHLAIALAYHGLLRVP
SRSEASDYDILWLSPSSTPSLNLPALIHKYVRPFTKHDSQHALQYVACICLSADQGDGVG
KEQIEYAWSEVRKVVVLAEGAGWDDLVGGLRQDGTRFAGTIEQMSQLLLLNDSDDYNDKI
VRAAASLCERERRTLEAIKLYNIAGAHDTVIACLAHALGDIVSQPDGGGEEGRRIEATAR
EIYYHYARLNRAAGRARDAVGALLRLREAIAAKEAGRFEAALEAIEATDLVPFEGDPARL
NRRAAEFEATYDDAVKRNLPTYLPLTMEILSELHKKYKNSAMSEASKKMALDNLRVKSRA
LVMFAGMLRFRMLPDVYSYLARLDVEIAL
NT seq
2610 nt
NT seq
+upstream
nt +downstream
nt
atggctgatctgtctgcattgctggaggcctcaaaggctctcgcgtctaacctggcacga
ccagacctacctgcagtgaatctctctcttgaccaaatagaggcacagtcaagacgactc
gtttcacgacagcctggcacttcgacggacaacgacagggcaaattacatactcgcacag
gcgcatgtcgacgcgccagctttggcgaattctatcgcgcatctcaacacttcgaccacg
ttctctccgttgcagccacttcacgacacggacgtctcgggtttccttcgtcatgcgcac
gagcagaacctcatttctacgatcgaagagggtcggcgtgaaactcaggaggatttctac
cgtgtgcttgaagatcgtagcagacgggattgggaggcgcgtaaaaaacgaatttttgaa
gagcttggagggcgtgccagtggtgtcgagggaaaggcgaatggtgaactcaggaaatca
ctgcgggcgagcacatctctcgcgcactcgactgccggacctctgtcgaataatctgcag
atgcaaagcaagatgcttgcgtacgatcatgccattaccgaactcaacaaagcaagattg
cgaggaacgtccttccccatcgtacacacgcttttccaaatcgctcgtgacatctctacc
gacgtgagtacaatggtgctgtcacaaatcccgcagctcttccatactctcactaaaatt
actgcggaacctccagccctaccaccactggagcattcaggtgcgcatatcctgaacgca
ccgcgattcgaacggaagtacgcccgcgtgtaccttggtgatcctgaggcgcgtgaagct
gtccagctccgcatgcaaattgctcaaggtgcaaaagaagcacttgaggagcagtactgg
gacgtgctcgaacgaactgttcaagcacgcccggcagatgcgcgccttggcggtgatccc
agcgtcgcgaaccatgttcgagcttttctactgctcagatattatcgaggcggtgaatgg
gaggaacggattgagctcgtaggaagtcagccattatgggcaaaattattctacttggtc
cgaactggtcacctcaaggatgcgagggatgaggcaaaaggacaccagaaagcactcgat
agtcgcgaaccgggcttctttaactatttcagactatggatcgatacgccgaacggaaga
cttccgaagactgctcgtgaccatctgcagtcaacatacaatacgcatatgttgaactca
gctacggctgatccattcaagcttgcactcttccgactcatgggtaaacttgacccggcg
cgacggagcattccgttggtcactgcgacagcggaggactggctttggttccagctcgct
atgattgacgaggaagaagcgggaggcttgcgagcgcttgccgaagtcctcatgagctat
ggcgaacgtcactttgaaggcacaccaaaccagcgtcgtcttggaatgtgggcaaatgtc
cttttgatgtgcgggcaatttgagagggccgtagctgcactggatgaaaatccagatacg
aaggttgaggccgttcatctggctatcgctcttgcgtatcatggtcttctccgtgtccct
tcaaggagcgaggcttcggactacgacatactctggctctctccttcttcgacaccgtcc
ctcaatctccctgctctcattcataaatatgtccggccgttcactaagcacgattcgcag
catgcgctgcagtatgttgcgtgcatttgcctatccgcagatcagggcgatggcgtgggg
aaggaacaaatcgaatacgcctggtcggaggtccgcaaggtggtcgttcttgctgaggga
gcaggctgggatgacctggttggagggttgcgacaggatggaacacgcttcgccggaaca
attgagcaaatgtctcaactcctattgcttaatgacagcgacgactacaatgacaaaatt
gtacgtgcagcagcgtcactatgcgaacgcgagcggcgcacgctcgaagcgatcaagttg
tacaacattgctggtgcacacgacacagtcatcgcatgtctcgctcacgcgcttggagac
atcgtatcccaaccggacggcggcggagaagaaggtcgtaggattgaagcgaccgcacgg
gagatatactaccactatgcacgtcttaaccgtgctgcaggacgagcgcgtgacgctgtc
ggtgccctcttacgtttgcgtgaggctatagcggcgaaagaagctggacgattcgaggcc
gcactagaagcgatcgaggcgactgatctcgtgccgtttgaaggtgacccggcgcgtctg
aaccgtcgtgcggctgagtttgaggcgacctatgacgatgctgtcaagcggaacttacca
acatacttaccacttacgatggaaatcctatctgaactacataagaagtataagaatagt
gcgatgtcggaggctagcaaaaagatggctctcgacaatttgagagtgaagtcgcgtgca
ctcgtcatgttcgctggtatgctacgcttcaggatgttaccagacgtatactcttatcta
gctcgcttggatgtcgagattgctctttag
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