Fomitiporia mediterranea: FOMMEDRAFT_85939
Help
Entry
FOMMEDRAFT_85939 CDS
T03132
Name
(RefSeq) lateendosome to vacuole transport-family protein
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
fme
Fomitiporia mediterranea
Pathway
fme04138
Autophagy - yeast
fme04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
fme00001
]
09140 Cellular Processes
09141 Transport and catabolism
04138 Autophagy - yeast
FOMMEDRAFT_85939
04148 Efferocytosis
FOMMEDRAFT_85939
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
fme04131
]
FOMMEDRAFT_85939
Membrane trafficking [BR:
fme04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
FOMMEDRAFT_85939
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_Vps8
TPR_VPS8_2
Beta-prop_VPS8
VPS8_N
Clathrin
RMC1_N
Beta-prop_EML_2
WD40_CDC20-Fz
PQQ_3
ANAPC4_WD40
Beta-prop_HPS5
WDR54
WD40_WDHD1_1st
WD40_Prp19
Motif
Other DBs
NCBI-GeneID:
18680297
NCBI-ProteinID:
XP_007266641
JGI:
Fomme1_85939
LinkDB
All DBs
Position
Unknown
AA seq
1437 aa
AA seq
DB search
MSLPYASVLINDSRPFIHPSISRLRSSLPATPRQRVVSSSSLGTANILGRDLLSPSPSHF
SSISRTSSTSNLRIADTVSDVGKEQEAFKWTTLRIIGEHVYHKAPDKANAILGSPVLGSP
TVLAANGLICIGTDSGRVFVFDFKQELKCICGDDNSARSYGPVTALALSHDHTFVAVGHG
QGHIQLFDIKQPLVAARTVVPTKLAAVRSGRQEGHLLGSRIVSLGFISGRHTAVVSADDQ
GLSFYHSLGRVLFMDANDCLRLLGKYPEEEPIASQQPIKRVDPQNGSAIPSPNGSATPRL
AQQVHRKANAILSMGPLPLGTVEHPTDSYQLVAMLTPIKLVIVGLKPTPKTWHRRHREGE
DGNNGRSRWRGCLAWFPSISTSENVVKATKKRDKRQSALQNASLPLLAYSWGSTLYILRV
SESRILQTVRNEKTGKIEKVDTGKVNFEDHGLLNLRSDILAIQWLNLNQIILFTDATLEV
FDIRASKVVENVAYEALNLVSPTLSYTANGAMAYQDSVRDIHHSVRVYKGKIFLLEYKEV
KVGTLLSWADRILAYVQEGDFLSAINLARDYYLGQAKGNKNGLPEDVDAMHAMVGEKMSD
LMVASARYAFSEDRLTDSTHVTADNRGVDRTSLFEDLVSTCARACIALDEFDFLFEDLFQ
YYDDSGISQIYLHQLEPFILDGSIHFIPPRITQRLVAMHDECGDYEAAERLIWHIDPDCL
DINQVLTLCQKYHLYDALIYIYNSALQDYITPIVELLGMVRKVQQTRRDRMLGVSDFNHP
ASYDGINEENLVLNAYRIYPYLSNILSGLRYPSETPLSPEDALKAQNDVYSFLFHGRSFV
WPAGGGGKLVLTADEEGGIEPTYPYARLLLRFDAEAFLHVVDIAFEQSYLNDETNGTSRQ
IIIKILLDIVVTSGPSLSPADVTFVNIFVARNVPKYPQFIHIAPSALQNLLIGLASDADQ
STREDRQLAAEFLLSAYTPHDSEKILHLFENAGFFRILRTWYRQEGQWAALLRTYVHDPE
LSSEEVFPNVEQTLSHALRAGRNQLPEDVISSLQYSIPLLLQMSIPHTALLIDKYAPGMH
SKVIDDFQVTDDHKRYAYLRCLLGPPLNGDESLGFTRENGPSTSVSASLQKLYLRLLCQL
EPSNVIVGLEYLPTNSLDTDEIVRICEEERMYEAVVWLINEESAVESLSRLEEFSRNQTA
DLGEALLREEGSATVTPELEEQLAKFEALCRMGIDICREHSEQTAEADVPLEDLWFKLLS
SQIDAVQAISSSISYGDGVSSCTPAEERVISSLRGLVQYSFTSLVAVSSTKAVSFPRLFK
RLVDSTAHSHSQSGAKYAEFRNIITSMLESYRSEGDLLAMSKRIIDTDFFDTYEDLTKER
SKGWPAASSKCLTCRKAVHPGTPVRSDPSSPPQKNSVIVSRTGVYHATCYPSNSNHA
NT seq
4314 nt
NT seq
+upstream
nt +downstream
nt
atgagtctgccttatgcaagcgttctcatcaacgattcgcgccctttcattcatcccagt
atctcaagactccggtcaagtctaccggccacgccacggcagcgtgttgtctcctcatcc
agtcttggtactgcaaatattcttgggcgagatcttttaagcccatctccttcacatttt
tcatccatttctcgaacttcatcaacatccaacttgcgaatagcagacactgtatcagat
gtcgggaaagagcaggaggccttcaagtggacaacattacgcattattggagaacatgtc
tatcacaaggctccagacaaggctaatgctatcctcggttctcccgtcttaggctcgccg
acagtattagcagcaaacggcttgatctgcattggcacggattctggacgtgtgtttgtg
tttgactttaaacaagagctgaagtgtatatgcggtgacgataactcggctagatcctat
ggacctgtcacggcattggcactttcgcatgaccataccttcgtggctgttggacatggt
caaggccacatacagcttttcgacattaagcagccactcgttgctgcacgaactgtcgtt
ccgactaaactggctgcggtccggtccggtcgacaggaaggccatctgcttggttctcgt
atcgtttcgcttggtttcatatctggacggcatacagcggttgtctctgcagatgaccag
ggactgtcattctaccacagcctaggaagggttctgtttatggacgcgaacgattgccta
cgcctattaggaaaatatcctgaagaggagcctattgcttctcagcagcctataaaacgt
gtagacccccagaatggatcagcgatcccttcaccaaatggctcggctacccctcgactt
gctcaacaagtccatcgtaaggcaaatgccattttatctatgggaccactgcctttgggt
acggttgagcatcctaccgattcgtatcaacttgtcgcaatgttgactcccatcaaactc
gtaattgtgggcttgaagccaactccgaaaacttggcatcgacggcatcgagaaggcgaa
gatgggaataacggaaggtcaaggtggcgaggttgccttgcatggttcccaagcatttct
acttcggagaatgtggtaaaagcaactaagaagcgggataaaagacaaagcgccctacaa
aatgcatcattacccttgcttgcgtattcttggggtagtacgttgtacatacttcgggtt
tcggaatcccgtatcttgcagactgtacgaaacgaaaagacaggcaaaatcgagaaagtt
gacacgggcaaagtcaactttgaagatcatggcctcttaaaccttcggtctgatattctt
gctattcaatggttgaacctgaatcaaatcatcctgttcacggatgcgacccttgaggta
ttcgatattcgcgcgtccaaggttgtggagaatgtcgcgtacgaagccttgaacctggtt
tctccaactctaagttatactgcaaatggcgccatggcttatcaggattctgtacgggac
attcatcatagcgtgcgagtctataagggcaaaatattccttcttgagtataaagaagtg
aaggttggcacactattatcatgggcggaccgtatattagcctatgtgcaagaaggcgat
ttcctgagtgccataaacttagcaagggattattaccttggccaggcgaagggtaataag
aatggacttcccgaagacgtcgatgcaatgcatgccatggtcggcgagaagatgagcgat
ttaatggttgcgtccgcacgttatgcgttctctgaggatcgattgacggactcaacgcat
gttaccgctgacaaccgaggagtcgatcgaacttcattatttgaagaccttgtgtcaacc
tgtgctcgagcgtgcatagcactggacgagtttgacttcctgttcgaagacctcttccag
tactatgatgattcgggtatctcgcagatctatttgcaccaactcgagcctttcattctc
gatgggtctattcatttcattccaccccgaattacccagcgtcttgtggcaatgcatgat
gaatgtggtgactacgaggctgcagaacggctcatatggcatatagatcccgattgtcta
gacatcaatcaggtccttacactgtgccagaaataccacctttatgatgctctcatttat
atctacaactctgcacttcaggattacatcactcctattgtcgagctccttggtatggtc
cggaaggtgcagcaaaccaggcgggaccggatgttgggagtttccgatttcaaccacccg
gcctcttatgatggtattaatgaggagaatctcgtgctaaacgcatacagaatttatcct
tatctatcgaacatcctatcaggattaaggtatccaagcgagacgccattatctccggag
gacgcattgaaggcacagaacgacgtttactcgttcttattccacggtcgatcattcgtg
tggccagctggaggtggtggcaagctagtacttacagcagacgaagaaggcggtatcgaa
ccaacctatccatatgctcggcttctccttcgctttgatgcggaggcatttcttcacgta
gtggatatcgctttcgaacaaagttacctcaatgatgagacaaatgggacgagcagacag
atcataatcaagattcttcttgacatcgtagtgacatctggcccatccctttctccagcc
gacgtcacgtttgtcaatatctttgttgcgcgaaacgtacccaaatatccacaattcatc
catatcgccccgagtgcattgcaaaacttgttaattggtctggcttccgacgcggaccag
agcactcgagaagaccgtcagctagctgctgagtttcttctctctgcatacacgcctcac
gatagcgagaaaatcttgcacttgttcgaaaacgctgggttctttcgcatcctacggacg
tggtatcggcaagaagggcaatgggctgccttactgcggacctatgtccatgacccggag
ctgtcatccgaggaagtcttcccaaacgtggaacaaacgttgtcgcacgcactccgcgcc
ggtagaaatcagcttccggaagatgttatctctagcctgcagtattcgatccctttgctt
cttcaaatgagcatcccacatacggcgctactcattgacaaatatgcacccggaatgcat
tccaaagtaatcgacgatttccaagttacagatgatcacaagcgatacgcatacctacga
tgtcttttgggaccgccgctgaatggggacgagtctcttggtttcacacgggagaatggt
ccatccacgtcggtcagtgctagtctccaaaagctatacctgagactcctctgccagttg
gaaccatcgaatgtcatcgtgggccttgaatatctgcctacgaactcactagataccgat
gagatcgtgcgtatatgcgaggaagaaaggatgtatgaagcagttgtctggctaatcaac
gaggaaagcgctgtagagtcattgtccagacttgaggagttcagtcgaaaccaaacagcc
gacctgggcgaagcactcctccgtgaggagggctctgccaccgtaacgccagaattggaa
gaacagctggctaaatttgaagccttgtgtcggatgggtatcgacatatgccgagagcac
tcggaacagacagcagaagctgacgtcccattggaggacctgtggttcaagttgctcagc
agtcaaatcgacgccgtgcaagcaatttcatctagcatctcatatggcgacggcgtgtca
tcatgtacacccgcagaagaacgagtaatatcctcactccgtgggctcgtgcaatattca
ttcaccagcctcgtagctgtcagttctacgaaagccgtctcgttccctcggctcttcaag
agactagtagactccacagcacactcgcatagccagtctggtgcgaagtacgcagagttc
cgaaacataatcacaagcatgctcgagtcgtaccgttcagagggcgatctgctggctatg
agcaagcgaatcatcgataccgatttctttgatacatacgaagacttgaccaaggaacgc
tcaaagggatggccagcggcctcgtcgaaatgcttgacgtgtaggaaagcagtccatcct
ggcacgccagttcgatccgacccatcctctcccccacaaaagaattcagttatcgtgtcc
cggaccggagtataccatgcaacatgttatccatcaaattcaaaccatgcgtaa
DBGET
integrated database retrieval system
