Fomitiporia mediterranea: FOMMEDRAFT_87335
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Entry
FOMMEDRAFT_87335 CDS
T03132
Name
(RefSeq) transcription elongation factor SPT6
KO
K11292
transcription elongation factor SPT6
Organism
fme
Fomitiporia mediterranea
Brite
KEGG Orthology (KO) [BR:
fme00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fme03021
]
FOMMEDRAFT_87335
03036 Chromosome and associated proteins [BR:
fme03036
]
FOMMEDRAFT_87335
Transcription machinery [BR:
fme03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
FOMMEDRAFT_87335
Chromosome and associated proteins [BR:
fme03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
FOMMEDRAFT_87335
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SH2_2
HHH_7
HTH_44
YqgF
SPT6_acidic
Spt6_S1
Tex_central_region
HHH_9
HHH_3
SH2
S1
Tex_YqgF
UBA_At5g58720
Motif
Other DBs
NCBI-GeneID:
18680365
NCBI-ProteinID:
XP_007267763
JGI:
Fomme1_87335
LinkDB
All DBs
Position
Unknown
AA seq
1449 aa
AA seq
DB search
MNLDTRPLPEEDVQIHSPVNGVAKGVNAGEDEDEEGEGEEIEQGKAISDDSSEEEEEDEE
AARRVREGFIVDEDEEEEGDDEEDDEEERRRSKKRRKHKHRHKHREPDEDEDLDEEDLEL
LEENTGGRIRSRHLTRLRRGRIVESSDDDLDEANIIGAQEIHDIQNIWDDDRAGGRDDDD
EMDMDDFIDDEEDEEEGAGAMAEEEREERRRERRRLEKERRKALRNRPELTGIDASTWDE
IHDVFGDGHDYDWALVDDEEEIMAEEAGKPEMKYQDVFEPSEIKARLLTEDDDLIRAQDY
PERMQLGTSTLSSNASITFPEALTPAECVDAASWVTPRLGGAKERDFFKPNGKFHYLLEK
LVGAVTRALEFLLVQFLEVPYIYAHRRDFISYFNPQDTHAPRVELLNQDDLWRIYALGQK
FRSLCQRKKALQRIYENIDAHDEYYEGQLVPNMDSVEVVADVTQWLGTKYKDNKKKSTLV
SPFRDEEEQAETRKHKLPSRMSAYEVAKKSIISRIAEGYGIKSHEIVVNFMSAGHNVHFV
EDKDLSPAAFAEQYADPDPSKALPAEDLLRQARMIIATELGIDPLLRRHVRDTFKNHAQI
SILPTDRGKTKIDDHHVYYVFKYLYNKPIEEMLQSTQFLNILEAESQHLVTVTISLPSDV
RQRLVNQLVEAFTSDSFSEMAKVWNEERALVVEDAVEKHLIPMGAKWVREFIREEVEDYL
AKSCADALHERVNMAPYHPPDLHEGEQASVLAVSWGKGDPKRDEINLVFLDEAGRLREHS
QIDNLLDSKNRDEFRDLVKRRRPDVVVIGGLSINTATLSHHVKMALNPHDIEILRPNESS
FMDDVSNDQALNIPVIYVQDEVARLYQHSKRATEEFPHLPLVARYCVGLARYAQSPLNEF
AALGGDLTAITFDDAVQPLIPTEKLLSAFERVLVDVVNKVGVDINRAVNDPYYATLLPYV
AGLGPRKAQALIKKIVSLGGNLVNREQFVKSGILTMRIFLNAAGFLRIAQDPEYKEPKSR
GGANADYSNYPDPLDDTRVHPEDYDLARKMATDALELDEEDVHDEHPSNVVGQIMKDSDN
VRKLDELNLDDFAISMEETSGELKRHTLNVIRAELIRPFGELRPKFVLPEASEVLTMLTG
ETERTLRVGLIVSVLVIRLTEGFAVVKLDSGIEGIINGMYQSDDGTVSVKKGQTLPGVII
DVKSDLVKDQFSIELSSRPSDVAVGDAQFRRWKPDEYWNVTQAERDYDVQQRKKRAEVDR
TRRVIKHPNFQNFNSAQAETFLDKQHPGDVVIRPSSKGLNHLAVTWKVADNLYQHIDVVE
PNADPSGQTLGGQLIVDGKYEFADLDELIVNHVKAMSRRVEELMAHEKFKKDDDELQKFL
ISFVAANPNKSIYGFTLNRKKPGHFNLSFLPKKGSSIQTWPVRVAPEAYYLFDAAAAGVA
ELCNAFKVR
NT seq
4350 nt
NT seq
+upstream
nt +downstream
nt
atgaacctggatacccgtcctctgcctgaggaggatgtgcaaatacattcgcctgtgaat
ggcgttgcgaagggtgtgaatgctggggaagacgaagatgaggaaggtgaaggcgaggaa
attgagcagggcaaggccatctcggatgacagttcggaggaggaggaagaagacgaggaa
gctgctcgacgcgttcgagaaggtttcattgtggatgaagatgaggaggaggaaggagac
gacgaagaagatgacgaagaagagcgtcggcgttcgaagaaacgtcgaaagcacaaacac
aggcataaacaccgtgaacccgatgaggacgaggatctcgatgaagaggatctagagctt
cttgaggaaaacacgggtggacgcatccgctcacgacatcttacgcggctgcgccgtggc
cgtattgttgagtcatccgatgacgacctggacgaggcgaacatcattggggcccaagag
atccatgatattcaaaacatttgggacgacgaccgcgctggtggacgtgacgatgatgat
gagatggatatggacgactttattgatgacgaagaagatgaagaggagggtgcaggtgct
atggctgaagaagagcgcgaggagcgcaggagagagaggaggcgtcttgagaaggaacgc
agaaaagccttgagaaatcgaccagaacttacgggcattgatgcaagtacttgggacgag
attcatgacgtctttggagacggtcatgattatgattgggcgttggtggatgatgaagag
gaaatcatggcggaggaagccggcaagccagagatgaagtatcaggatgtctttgagccg
tctgaaataaaagcacgactacttacggaggatgatgacctcattcgtgctcaagattat
cccgaacgtatgcagcttggtacttccaccttgtcatcgaatgccagtattacattcccg
gaagcactcactcccgcagagtgtgttgatgctgcttcttgggtcacaccgcgtctcggg
ggagcgaaggaacgtgactttttcaagccgaatggaaaattccattaccttcttgaaaaa
ctcgttggagccgttacccgtgccttggaattcttgctcgtacagttcctagaggttcca
tatatctacgcacaccgacgggatttcatctcttacttcaaccctcaagatacacatgca
ccacgcgtagagctcctaaaccaggacgatctgtggcgaatatatgctcttggacagaag
tttcgctctttatgccagaggaagaaagccttgcagcgcatctacgaaaatattgatgcc
catgatgagtactatgagggtcagttagtgccgaacatggatagtgtggaggtcgtagcg
gacgtgacgcaatggcttgggacgaagtataaggacaacaaaaagaaaagcacgctcgtg
tccccgttcagggacgaggaagagcaggcagaaacgaggaagcataagcttccaagtcga
atgtctgcatacgaagttgctaaaaaaagtattatttctagaatcgcggagggctatggg
ataaagtcgcatgaaattgttgtgaacttcatgtctgctggtcataatgtccacttcgtt
gaggacaaagatctgtcgcctgctgcgtttgcagagcaatatgctgacccggacccgtct
aaggcccttccagcggaggatctacttcgtcaggccaggatgatcatagcaacggagctg
ggaattgatcccttattgcgaagacacgtcagggatacgttcaagaaccacgcacaaatc
tccatattgccgacggaccgagggaagacaaaaatcgacgaccatcacgtatactatgta
ttcaagtatctttataacaaaccgatcgaggaaatgctgcaatcgacgcagttcctcaat
atacttgaggcggaatcacagcacttggtgacagttactatttccctcccgagtgatgtt
cgacagcgacttgtgaaccaactggtggaagcgttcacatctgacagtttcagtgaaatg
gcgaaggtctggaatgaagaacgcgctctcgttgtcgaagatgccgtcgagaagcacctc
attcccatgggtgcgaagtgggttcgggaattcattcgcgaggaggtcgaggactatcta
gcgaagagttgtgctgatgctctgcatgagagggtaaatatggcaccctatcatcctcct
gacttacacgagggtgaacaagcatccgttcttgctgtatcatggggcaaaggcgacccg
aagagagatgaaatcaacttggtttttctcgacgaagcaggtcgtcttcgagaacattca
cagatcgataatttactggattcgaaaaatagggatgagttcagggacctcgtgaaacga
cgaagaccagatgtggttgtaatcggtgggctgtcaattaacacggccaccttgtcccac
catgtcaagatggctctgaacccacacgatatcgagattctcagacccaatgaaagttca
ttcatggatgacgtatcgaatgatcaggcgttgaacattccggtgatctacgttcaggac
gaggtcgcgcgtttgtatcaacatagcaaacgtgcgactgaagagttcccgcacttgcct
ctagtcgcgaggtattgtgttggtctggcgcgttatgcgcagagccctctaaacgagttc
gctgcattgggaggagatctgactgccataacattcgacgacgcagtacaacctcttatt
ccgactgagaagttgttgtcggcctttgagcgcgtcttagtcgatgttgtcaataaagtc
ggggtagatatcaatcgggctgtcaatgatccctattatgctaccttgcttccatacgtt
gctggactgggccctcgcaaagctcaagctctcatcaagaagattgtatctttgggtggt
aacctggttaatcgcgagcaattcgtcaaatcgggtattttaactatgcgcattttcctg
aatgctgctggtttccttcgcatagcacaagacccggagtataaagaacctaagagtcgt
ggtggggcgaacgctgattactcgaactatccggatccacttgatgacactcgagtacat
cctgaggactatgacttggctcggaagatggccactgatgctctagaactcgatgaggaa
gatgtccatgacgaacatccttcgaatgttgtcggccaaatcatgaaggactcagacaac
gtcaggaagcttgatgagctcaacctcgacgatttcgcgataagcatggaggaaacgagt
ggcgaactcaagcgacatacattgaatgtcattcgtgcggaactcattcgaccgtttggg
gaacttcgaccgaagttcgtccttcctgaggcctcagaagtgcttactatgttgacgggt
gaaacggagcgtactctgcgtgttgggttgatcgtctccgttcttgtgatacggctaacg
gaaggctttgcggtcgtaaaattggattcgggcatcgaaggcatcattaatggaatgtat
cagtcagacgacgggacagtctccgtcaagaaagggcagactcttccaggtgtcattatt
gatgttaaatcagacctggtcaaggatcagtttagcattgagctttcgtctcgaccatcg
gatgtcgccgtcggtgatgcgcagttccgacgctggaagccagacgagtactggaatgtc
acccaggccgaacgtgactatgatgtacagcagcgcaagaagcgtgcagaggtcgaccgc
acgcgtcgagttattaagcatcccaacttccaaaacttcaattctgctcaggcagagacg
tttttggataagcaacatccgggcgacgtggtgattcgaccatcttctaagggattgaac
cacttggcagtgacctggaaagtcgctgacaatctgtatcagcacatcgacgtcgtcgag
cccaacgccgatccttcgggtcagacgcttggtggtcaacttattgtggacgggaaatat
gagtttgccgatctcgatgaactgattgttaaccatgtaaaggcgatgtcgcgacgagtt
gaagaactcatggctcacgagaaattcaagaaggatgacgacgaactccagaaattcttg
ataagcttcgtcgcggccaatccgaacaagagcatatatggattcaccttaaataggaag
aaacctggccatttcaacttgtctttccttcccaagaagggttcgtcaattcagacatgg
cctgttcgcgtagctcctgaggcgtactacttgtttgacgctgctgcggccggtgttgct
gagctgtgcaatgcattcaaagttcggtaa
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integrated database retrieval system
