Fomitiporia mediterranea: FOMMEDRAFT_88508
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Entry
FOMMEDRAFT_88508 CDS
T03132
Name
(RefSeq) hypothetical protein
KO
K12586
exosome complex component RRP43
Organism
fme
Fomitiporia mediterranea
Pathway
fme03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fme00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FOMMEDRAFT_88508
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fme03019
]
FOMMEDRAFT_88508
Messenger RNA biogenesis [BR:
fme03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
FOMMEDRAFT_88508
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
DUF406
Motif
Other DBs
NCBI-GeneID:
18680433
NCBI-ProteinID:
XP_007268980
JGI:
Fomme1_88508
LinkDB
All DBs
Position
Unknown
AA seq
294 aa
AA seq
DB search
MSTSFAPSASATTTPQPQSVDTELQAETFRRLHPRTYLERFLNEGFRPDGREVADFRDVS
VNVGSISTADGSSLVRLGDTTIVCGVKAEIAEPELDSPELGFIVPNLDLPAICSPKFKPG
PPADEAQVLSERLYDALISSETVSLPSLCIHPRKAVWVLYVDATCINFDGNVFDAALLAM
IAALKNTRLPKATFDEETGRTTCSRKEKTALQILRTPLAISFGIFDSTHILADPSSFEEP
LLNTSYTVIIDEKDELVSVQQAGASTSSVQDSMLNCIAAARKRRKELGAIIDSL
NT seq
885 nt
NT seq
+upstream
nt +downstream
nt
atgtccacctccttcgctccgtccgcaagtgctactacaacgccccagcctcaatccgtg
gatactgaactccaagcagagacttttcgacgtctccatccacgtacatatctcgaacga
ttcctcaacgaagggttccgtcccgacgggcgcgaagtagccgactttcgcgatgtcagt
gtcaatgtaggctcgatatcgactgcagacggctcttcactcgttcgtctcggggacaca
acgattgtctgcggtgtcaaagctgagattgctgagcctgagttggatagtccagagctc
gggttcatcgttccgaatctcgacctcccagcgatctgttctccaaaattcaagcccggt
ccaccagccgacgaagcacaagtgctttccgagcgactatacgacgcgttaatctcttcc
gaaacagtttcgttaccatccttatgtatacaccctcgaaaggccgtttgggttctttac
gtcgacgcgacgtgtatcaatttcgacgggaacgtcttcgatgctgcgttacttgctatg
atcgctgccctcaagaacacccgactacccaaagctactttcgatgaagaaacaggccga
acgacttgttcacgaaaagaaaagactgctttacaaattttgcgaactccacttgctatc
tcatttgggatcttcgactcaacacacatactcgctgatccatcttcattcgaagaacct
cttcttaatacttcttacaccgtcattatagatgaaaaagacgaattggtgtctgtacag
caagcaggagcgagtacgtctagtgttcaagacagtatgctcaactgcattgcagctgcg
aggaaacgacggaaagagttaggagctatcatcgatagtttatga
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