Fomitiporia mediterranea: FOMMEDRAFT_89130
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Entry
FOMMEDRAFT_89130 CDS
T03132
Name
(RefSeq) RNB-domain-containing protein
KO
K18748
protein SSD1
Organism
fme
Fomitiporia mediterranea
Brite
KEGG Orthology (KO) [BR:
fme00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fme03019
]
FOMMEDRAFT_89130
Messenger RNA biogenesis [BR:
fme03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Other mRNA localization factors
FOMMEDRAFT_89130
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
Dis3l2_C_term
OB_Dis3
Rrp44_S1
CSD2
Rrp44_CSD1
OB_HELZ2
Motif
Other DBs
NCBI-GeneID:
18680473
NCBI-ProteinID:
XP_007268264
JGI:
Fomme1_89130
LinkDB
All DBs
Position
Unknown
AA seq
968 aa
AA seq
DB search
MFNKLFPDGGVGPINSNAGLTDLAQAQAQLQSLQQFRAASGGHHQKLPSFSFPNMLPNVM
AANMMGIGGFNLLQQQQQQFQMALQQQNNQPQRKSLFAPYLPQASLPPLLAAGKLVVGIL
RVNKRNRSDAYVATEVLDADIYICGSKDRNRALEGDIVAVELLDVDEVWGTKKEKEEKKR
KKEENAAYDPKSAAGRKNDKKKDDVEVEGQGLMLFEDEEVTDEVKPQFAGHVVAVVERMP
GQLFSGTLGLLRPSSAATKEKQEAERREREGDRGEEQRRGPIERPKIVWFKPTDKRVPLI
AIPTEQAPPDFVQNSEAYADKLFVACIKRHPISSLHPFGTLVEELGPIGNIEVETSALLK
DCNFPTEDFTDNVLKCLPPTPWSIPEREYEIRTDLRQERVFTIDPDTAKDFDDAVHIKKN
EDGTYDVGVHIADVSHFVKPNTALDRDARKRATSVYLVQRAVPMLPPTLSEQICSLVPGQ
ERLTFSVLFTMTEDGKVTKKRFEKTIIKSCARLTYTDAQNVLDGKPLGSVPVSPEFDAVD
IEHDLKVLNDLARNLRKKRYEAGTLSLDSLHLTFALDENGLPTDTSAYERTDSHKLIEEF
MLLTNIAVAQQIGHHLPEQALLRRHEEPIERRLIIFKERAARLGYTFDTSSAGAFMRSFD
AMEDQNARKLLQIIAYKAMHTAKYFCAGMLDIAKYSHYALNVPLYTHFTSPIRRYADIVV
HRQLESIFVNNNGAEAKFSMDRDSVAKVAQQCNIKKESSKLAQEQSTHLYLCVLIADLTQ
RYGPVVRPATVVNVLDAAFDVLIPEFGIEKRVHVDQMPIDNHVFDEHSHSLQIYWSNRDV
ISWLAENSDDEHLKKVKQTAEQHAVKMEVSSRLNDESALFDEDDADDEIVLGRTQPGDAQ
KETSKQRLISQAKLKPEFEGLKTTSSGHKIQEIRELMAVPVIITADLTKSPPVIKVYSVN
PYAEEQKK
NT seq
2907 nt
NT seq
+upstream
nt +downstream
nt
atgttcaacaaattatttccagatggcggtgttggacccatcaattctaatgcgggcctt
acggacctagcacaggcgcaggcgcaacttcagagtttgcagcaattccgtgctgcttct
ggtggtcatcatcagaagcttccgtccttcagcttccccaacatgctgccgaatgttatg
gctgctaatatgatgggcattggtggcttcaaccttcttcagcaacagcagcagcaattc
cagatggcgcttcaacagcagaacaatcagccgcagcggaagtccctgtttgccccgtac
cttccgcaagcgtctctgccaccactccttgcagcaggcaagcttgttgtcggtattctg
cgcgtcaataaacgcaacagatcggacgcgtatgttgccaccgaggtactggacgccgac
atctatatctgtggatctaaggatcgtaatcgtgcattggagggagacattgttgcagtc
gagcttctcgatgtcgacgaagtctggggcaccaagaaggagaaggaggagaagaagcgc
aagaaggaagagaatgctgcctatgatcccaagtctgccgctggccgtaagaatgacaag
aagaaggacgatgttgaggtggagggccagggactgatgttgttcgaggatgaagaggta
actgatgaggttaagcctcaatttgcaggccatgtcgtggcggtggtggaacgcatgcct
ggacaactcttctccggaacattgggacttctccgtccgtcttctgctgcgaccaaggag
aagcaagaagctgaacgccgtgagcgtgaaggtgaccgcggtgaggagcagagacgcggt
ccgatcgagaggccaaaaattgtctggttcaaacctactgacaagcgtgttccgctcatc
gccattcctacggaacaggctcctcctgatttcgtccagaactcggaggcatatgccgac
aagctgttcgtcgcctgtatcaaacgtcatccaataagctctcttcatccattcggtaca
cttgtcgaggagcttggtccgattggaaacattgaagttgagacaagcgccttgctgaaa
gattgcaacttcccaactgaggactttaccgacaatgttctcaagtgtcttccgccgact
ccgtggtccattccggagagagaatatgaaatccgcacagatctgcgccaggagagagtc
ttcaccattgaccctgacacagcaaaggactttgacgatgcggttcatattaagaagaac
gaagacggcacttatgatgttggagtgcatatagctgatgtttcacacttcgtgaagcct
aacacagcacttgaccgtgatgcacgcaagagggcgactagcgtttaccttgtccagcgt
gctgtgccgatgcttccacccacgctcagcgagcaaatttgcagtctagtccctggccag
gagcgcctaactttctcggtactcttcactatgactgaggatgggaaggtcacaaagaaa
cgtttcgagaagacaattatcaagtcttgcgctcgtcttacatatacggatgcgcaaaat
gtgcttgacggcaagcctcttggctctgtcccggtctctcctgaattcgatgctgtggac
atcgaacatgatttgaaggttttgaacgatctggcgcggaatctgcgcaagaaacgttac
gaggctggcacccttagcctcgactctctccatctgactttcgcccttgacgaaaacggt
cttccgaccgacacttccgcttacgagagaactgactcacacaaacttattgaagagttt
atgctacttactaatattgctgtggcccaacaaattggccatcacctgccggaacaggct
cttcttcgccgtcatgaagagcctattgagcgtcgtcttatcatatttaaggaacgtgca
gcccgtcttggttatacgttcgacacatcttcggctggcgctttcatgaggtccttcgat
gcaatggaagaccagaatgctcgcaagctactccagataattgcgtacaaggctatgcac
actgcgaagtacttctgtgcgggcatgctggatattgcgaagtacagccactatgcactt
aatgtaccattgtacacgcacttcacttcacccattcgtcgctatgcagacatcgtcgtg
catcgtcagcttgagtcgattttcgtgaacaacaacggtgccgaggccaagttctcaatg
gatcgtgactccgtcgccaaagttgctcaacagtgcaacatcaagaaagaatcttccaag
cttgctcaggagcaatcaacgcatctgtacctctgtgtactcattgctgatcttacccaa
cgatacggccccgttgttcgtccagccacggtagtcaacgtcctcgacgccgcgttcgat
gtgctcattcccgaatttggtattgagaagcgtgtgcacgtcgaccagatgccaatagat
aaccatgtctttgacgagcatagccactcgttgcagatttactggtccaaccgtgatgta
atctcctggctggctgagaacagcgatgacgaacatctgaagaaagtgaagcagacagct
gagcagcatgctgttaagatggaggtttcatcgcggttgaatgatgagtcggcgttgttc
gatgaggatgatgccgacgacgaaattgtccttggtagaacgcagccaggcgacgcgcag
aaagagacatcaaagcagcgtctcatttcgcaagcgaagctcaagccagaatttgaaggg
ctcaagacgacgtccagtggacacaaaatccaggaaatccgcgaactgatggctgtacct
gttatcattactgcggacctgacgaagagtcctccggttattaaggtctacagcgttaac
ccatacgccgaagagcagaagaaatga
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