Fomitiporia mediterranea: FOMMEDRAFT_90294
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Entry
FOMMEDRAFT_90294 CDS
T03132
Name
(RefSeq) hypothetical protein
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
fme
Fomitiporia mediterranea
Pathway
fme03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
fme00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
FOMMEDRAFT_90294
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fme03021
]
FOMMEDRAFT_90294
03019 Messenger RNA biogenesis [BR:
fme03019
]
FOMMEDRAFT_90294
Transcription machinery [BR:
fme03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
FOMMEDRAFT_90294
Messenger RNA biogenesis [BR:
fme03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
FOMMEDRAFT_90294
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Pcf11_C
CID
zf_PCFS4
Pfc11_Clp1_ID
US30
Motif
Other DBs
NCBI-GeneID:
18680553
NCBI-ProteinID:
XP_007268502
JGI:
Fomme1_90294
LinkDB
All DBs
Position
Unknown
AA seq
626 aa
AA seq
DB search
MPPYEPGNFRRDYATRLSELTMNSKPIIQNLSMMAQNFTRFSDIVAECLQAHIRRVPAWM
KLPAFYVLDAISKNVYEPYAAKFSAFVVPLFLETYGQVDPQTRSKMAEMLVTWRTGSPSG
KELFGVAAQVSLERQIWGNDPSTIAEPSTRRHGQTAPLTKSQVLAELDVTLALKEQATHA
NPYDTMIANQVNVLHQLRRMVELGVSQEELQQILSQLRAMGRDNAAVPPPPPPQLVAPPP
SVYNGPPIVPPPAQYVQPSAPLVPLSTYPAPAPVSQQPNISTTPVPSAVPNMSGITSLFD
SLVKAGLVSSSNTPLGAGTSTQTPPPASETLDEDKAKVQKKAEDERLEAQRKYAQEILSM
NIRLTTADITRQRPKNVSTLYERLSIQCKQCASRFSDDSAGKKNLQDHLDMHFRHNRRMK
EASGRGFSRSWFISVNDWISEPLTDVKGKGRELVLVGKNADATKEAAAKRDAEVRASVVV
VPPGDEAKSISCPVCKEVLRSEFREEDEEWIWRNAVRVKDKIFHATCQAEMATSTTLAAK
LRADESAAAATARSRSRTPERTAPSTPTQAAQKAKLNLLSFDRTLVADTSSVAGVKRKAH
GDSQDTGSAETLVGTPPTKKVVLSAA
NT seq
1881 nt
NT seq
+upstream
nt +downstream
nt
atgcctccgtatgaacccggcaattttcggagagactacgctactcgcttgtccgaacta
acgatgaattcgaaaccaattatacagaatctgtctatgatggcacagaattttactcgc
ttctccgatatcgtcgccgagtgcctccaggctcacatacgtagggtaccagcttggatg
aagcttcctgctttctatgttctcgatgcgatctcgaaaaatgtctatgagccctatgcc
gccaaattctcggcattcgtcgttcctctgtttcttgaaacttacggacaggttgatccc
caaactcgtagcaaaatggcggagatgcttgtcacgtggcgaactggttcgccttcaggc
aaggaacttttcggcgttgcagcccaggtttccctcgagcgccaaatatggggaaacgac
ccttcaactattgctgagccttcaactcgtcgacatggccaaactgctcctcttacgaaa
tcgcaggttcttgccgaacttgacgttactttggctctgaaagaacaggcgactcatgcc
aatccatatgatacgatgatagcgaaccaagtcaatgttttgcatcagctccgtcggatg
gtcgaactaggagtttctcaagaggaactgcaacagattctttctcaacttcgtgctatg
ggccgtgacaatgcagcagtacctccgcctccacctccccaacttgtagccccaccacct
tctgtatataacggaccacccattgtaccaccgcctgctcagtatgttcaaccgtctgct
cctttggttcctcttagtacatatcctgcacctgctcctgtgagccaacagccaaacatt
tcaacaactcccgtgcctagtgcagtacctaatatgtctggaataacaagtctttttgat
tcgcttgtgaaagcgggtctggtgagctctagtaacacccctctcggagcaggtacgagc
acgcaaactcctccaccagcatccgagacgctggatgaggataaggccaaggttcaaaag
aaggcagaggacgaacgcttagaagcccaaagaaaatatgctcaggagattctcagcatg
aatattcgtttgacaacggcagatattacaagacaacgacccaaaaatgtctcaactttg
tatgagcgcctctcgattcaatgcaaacaatgtgcttctcgtttttctgatgactctgct
gggaagaagaatttgcaagaccacttggacatgcattttcgacataaccgtcggatgaag
gaagcatcgggacgtggctttagcaggagttggttcattagtgtgaatgactggatttcc
gagccgttaacagacgtgaaaggtaaaggacgggaattggtattggttggcaagaacgcc
gatgccacgaaagaagcagctgcgaagcgcgacgcggaagtaagagcttcggtagtcgtc
gttcctccgggtgatgaagcaaagagcatcagttgcccggtttgcaaggaggttttgaga
agtgagttcagagaagaggatgaagaatggatctggcgcaatgctgtgagagttaaggat
aagatttttcatgcaacatgccaagccgagatggctacttccacgactcttgccgctaag
ttacgtgcagatgaatccgcagcggcagccaccgcacgaagccgatccagaacacctgag
cgtaccgcaccttccacccctacccaggctgcccagaaagcaaagttaaatcttctatcg
tttgacaggacgcttgtcgcagatacatcttcagtggctggggtaaagcggaaagcacat
ggcgattctcaggacactgggagcgcagagacactggtagggactccaccaacgaagaag
gtggttttatctgcagcatga
DBGET
integrated database retrieval system
