Fomitiporia mediterranea: FOMMEDRAFT_97735 Help Entry FOMMEDRAFT_97735  CDS       T03132                                  Name (RefSeq) hypothetical protein   KO K10706   ATP-dependent RNA/DNA helicase, senataxin [EC:5.6.2.5 5.6.2.3] Organism fme  Fomitiporia mediterranea Brite KEGG Orthology (KO) [BR:fme00001]  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03021 Transcription machinery [BR:fme03021]     FOMMEDRAFT_97735 Enzymes [BR:fme01000]  5. Isomerases   5.6  Isomerases altering macromolecular conformation    5.6.2  Enzymes altering nucleic acid conformation     5.6.2.3  DNA 5'-3' helicase      FOMMEDRAFT_97735     5.6.2.5  RNA 5'-3' helicase      FOMMEDRAFT_97735 Transcription machinery [BR:fme03021]  Eukaryotic type   RNA polymerase II system    Other transcription-related factors     Transcription termination factor      FOMMEDRAFT_97735 BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  SEN1_N AAA_11 AAA_12 SEN1_barrel AAA_19 AAA_30 UvrD-helicase nSTAND3 AAA_22 ResIII AAA_25 EsxC SR-25 Motif Other DBs NCBI-GeneID:  18680960 NCBI-ProteinID:  XP_007271669 JGI:  Fomme1_97735 LinkDB All DBs Position Unknown AA seq 1825 aa AA seqDB search MAQDASRVSRHELEARLKQLRDVPVNTAGSQDRDMIPLHEHLMGVKPDSDGLTHWFCPRA ELLTQELATFLLRLHAYTNDKVDKWRKQIIGVWRGCADCIRCMDEVKGSSRTTYFGAFSD TILSGFWHSFEEFEVKTIVEALTEAGITPESDKSLADISSPVLYHILSKPSALGHPFILG VISSQPFLPRSIDWPIDPPPPAYFLLIVYNDVDIRNWALDHVSKAEPIAKEYFDYRHYRH ELALRLLSKRLNTDTGLNDSIATQTLTQTARNIEKEFPFAQSPSLIWAGFASVLRLLPME VYEKFALHRIIMGHLHDNGPHFREVLRCLLQTLKKLGNKIWSEESADYPQVVFDSIKDNP SYIDLIFAHNQQKEQAWFLMIFLEYLRSVWEMQIFEDIVARFAAFTCDELQHERFGQQRP LVMSIAMQILSSALQRANKLKSPSHRQSILNVLDIHFDLIVAVCFSQQYAKSEWAPARSA ALSLVRNVLFSDVEQVAIAAVKLSAMEASVDSETIRKLAPSVRKQVWWKVYTNLSGKDVE GISMLLDLAARSARLDKLSKKVASRTIWKYYDANQTKPPRDLLEAVDAAVDSVNSSLTIV RNGFLDAVTKFANLNSSPTLMKAICQHDWASHLVILLLSPVEDLQVAAQTLIGQTYDVDV RTDCFREILKAFPESSFKGLYEYLSEFNTYALKVAEACSVSKALVRCMTDVIEVLGNSPD GLLKNPAYVKTASESFSFKTELPKLWKAMTTSIAVIFKRTPKWAVYFDNNVMTEWMRDAL IFARDLLERRRTFEAATSEVQDDDDIISSPRKPSGIGKKMVEDLQDVLMELQGWLRLTDT ELLYQSFALLKSLFQCFRAANVKPSDEVLAKLSKFIEQNKTSSDAKRVSFLNKADLAELE VAVADFTEEDEVELVSVKLGKRRAFGRESSTSTTSGDARAERKRAKIELKIQDISKRPLK GTKQTKLISGKLSLPVAQKSTRIPEMRVSEPILRKQETKYEGSRRPRPAASTSSIPASPS SSSSSDSEDSDGPTNLASLINKAKEQKERAKEKEKQLTRERRKVQHIEDPRVKQARLEEE RRRKEYEAARRAAMRLKPDITSLHRVILSWNYDHDGSDPPMERPPLAHVPDMFKSHEEYT RIFRPLLMLEAWSQIVKSKEERTPEIFHIKIAARSLMPPWLDLEVVIDAVPGPEWYLSPE TDIVLLRHMAGKPCIMAKVTSFRKTNDEIGCGLRVCTNALNADPGLSIGSTWRLNLVLTT LHREYAALMALPYYDMVDIILQPRLADPVIPSGDELQRTMKAYRVNEPQAKAIISSMQTK GFSLIQGPPGTGKTWTILGLVGAFLSSRRTPPKLIAIPGKAPPPAPKPASQKLLICAPSN AAVDEITKRLIEGVRGPNGQRLSPKVVRVGADSQINVSAKEVSLDTLVEAKMNSDGGNPH GDGAGDAKNLRAELEQVKEARQKKIEELQSTINNTSRIQMLENEIRGLNDKRIGLSQKLN QLRDKMKSQNRSIDAIRRKYRHEILGAADIICSTLSGAGHEQLEPFDFSMVIIDEAAQSI ELSSLIPLKYTSTRCVMVGDPQQLPPTVLSPEASKWGYDQSLFVRLQKCRPEAVHLLSIQ YRMHPEISLLPSKVFYGGRLRDGPDMDKKTEQLWHNEPRFGAYKFFSVENGKEEQARIGH SIYNQAECRTIIAAYDRLRKQFSSINFDYRVGIVSPYRSQVLEMRKLFTQRFGAEIVSKV DFNTVDGFQGQEKDIIMLSCVRAGTSLATVGFLADIRRMNVAITRARSSLFIFGHAPTLQ RSNRVWKDIVDDARSRACFVELVRA NT seq 5478 nt NT seq  +upstreamnt  +downstreamnt atggcacaggatgcctccagagtatcaaggcatgaactcgaggccaggctaaaacaacta cgcgatgttcccgtcaacacggcaggatctcaggacagggacatgattccactgcatgaa catctaatgggcgtaaagcctgactcggatggattgacgcattggttctgtcctcgtgcc gagctcttgactcaggagctcgcaactttcttgcttcgtttgcacgcgtataccaacgat aaggtagacaaatggcgaaagcagataataggcgtttggagaggctgcgcggactgtatc agatgcatggatgaggtaaagggctcgtcgaggacaacttactttggtgcattctcggat acaatcctctcaggtttctggcacagtttcgaggaatttgaagtgaagaccatcgtcgag gctttgactgaggctggtattactccagagtccgacaagtcacttgcagacatctcctca ccagtattataccatattctttcgaaaccctctgcgcttggtcatcctttcatactgggc gtgatatcctctcagccgtttcttccgcgttcgatagattggccgatagacccacctccg ccggcgtactttctgcttatcgtctataatgatgtagacatccgcaactgggcattagat catgtgtctaaggcagaaccgattgccaaggagtatttcgactaccgacactatcgacac gaactcgcattacgacttttatccaaacgattgaatacagacaccggtctaaatgactca atcgccactcaaactcttactcagacagcacggaacatcgagaaggaatttccattcgca caatcaccgagtcttatttgggcaggctttgcttccgtcttgcgtctccttccgatggaa gtgtatgaaaaatttgcgttgcatagaataatcatgggtcatttgcatgacaacggacca cattttcgagaagttcttcgatgtctgcttcagacactgaagaaactaggcaataaaatc tggtccgaagaaagtgccgactatcctcaggtcgtgtttgattccataaaggacaatcca agctatatagacttgatcttcgctcataatcaacagaaggaacaggcctggttcttgatg atttttcttgaatatctcaggagtgtttgggaaatgcaaatctttgaagacattgtagca agatttgcagcattcacatgtgacgagttacagcacgaacgtttcggtcagcaacgtccg ctcgtgatgagcattgctatgcagattctgtccagtgcattacaaagagctaataagctc aaatctccgtcacatcgacaatccattctcaatgttctcgacattcattttgacttgatt gtggccgtctgtttctcgcagcaatatgcgaagtcggagtgggcacctgcacgttctgca gcacttagtttagtccggaacgttctcttctctgacgttgaacaggtagcaattgctgct gtcaagctttctgccatggaggcttccgtcgatagcgaaactattcggaaacttgcaccc tctgtgcgcaagcaggtatggtggaaggtctacacgaacttatctggcaaggatgtggag ggtatctcaatgcttctcgatcttgctgcaagatccgcaaggttagataaactttctaag aaagtcgcttctcgaacgatttggaaatattatgatgcgaaccagacgaaaccacctcgg gatcttctggaagcagtagatgctgcagttgattctgtcaactcatcgttgacaatcgta cggaatggattccttgacgccgtgactaagtttgcgaacttaaattcgtcgcccactttg atgaaagcgatatgtcagcacgattgggccagtcacctcgttattcttttgctttcgcca gtcgaggatctgcaagtcgcagcacagaccttgatcggtcaaacttacgacgtcgacgta cggacagactgtttccgcgaaatcctaaaggcgttcccggagtcatctttcaagggtctt tacgaatacctttccgagttcaacacctacgcattgaaggtagccgaagcatgcagtgtt tcgaaagcactcgtgcgatgtatgacggacgttatcgaagtcttgggcaattcacctgac ggtctcctgaagaacccagcttacgttaagaccgcatcggaaagtttctcattcaagact gagctgccaaagttgtggaaggccatgaccacttcaattgccgtcatcttcaagcgcaca cctaaatgggctgtctacttcgacaacaatgtgatgacggagtggatgcgcgatgcgttg atttttgctagggatttactcgaacgacggaggacgtttgaagcggctacgtctgaagtg caggatgacgacgatatcatctcctcgccccggaaaccgtcaggaattggcaagaaaatg gtagaagacttgcaggacgttctaatggagctgcaaggctggctacggttgacggataca gagcttctgtaccagtccttcgctctcttaaagtcactcttccagtgctttcgtgcagcg aacgtcaagccctccgacgaggtcctcgcaaagttgtctaagttcattgagcaaaacaag acttcttcagacgccaagcgtgtttcgtttctgaacaaggcagacttagcggaacttgaa gtggctgtcgccgatttcacggaggaggatgaagttgaacttgtatctgtcaagttagga aaaagacgagctttcggcagggaatcatcaacctcgacaacctcaggtgatgcacgagcg gagcgtaagagggcaaagatagaactgaagattcaggatatttccaagcgaccgcttaaa ggtaccaagcagacgaagctgatatctggaaagctatcattgccagtcgctcagaaatcg acccggatacctgaaatgagagtatcagaacccatcttacgcaagcaagagacaaagtat gaaggatcccgccgtcctcgacctgctgcaagtacttcgagtattccggcatcaccttcg tcttcgtcaagtagtgactctgaagactcggatggcccaactaaccttgcatcgctcata aataaagcgaaggaacagaaggaaagagcaaaggaaaaggaaaagcagctaactcgtgaa cgtcggaaggttcagcacatcgaagaccccagagtaaaacaagcccgtttagaagaggaa agacgacggaaggaatatgaagcggcgaggcgcgctgctatgcgactgaagccggatatc acttctctccatcgtgtcattttgtcttggaattacgaccatgacgggtcggatccccca atggaacggccaccacttgctcatgtaccggacatgttcaagagtcacgaggaatacaca cgcatcttccggccattacttatgcttgaagcgtggtcgcagatcgttaagtccaaagaa gagaggacaccagagattttccatatcaagattgctgctaggagcttaatgccgccatgg cttgacctcgaggtggtgatcgatgccgtgcctggtcccgaatggtacctaagtcccgag acagacattgttttattgaggcacatggctggtaaaccgtgcatcatggctaaggtaacg tcattccggaaaactaatgacgagatcgggtgtgggttgagagtctgcacgaatgcgctt aatgcagatcccggactgtccattggctcaacgtggcgtctaaatctcgttctcaccact cttcaccgagaatatgctgctttgatggctcttccatactatgatatggtagatataatc ttgcaacctcgacttgcagatccggtgatcccgagtggagacgaattgcaacggacgatg aaggcgtaccgagttaacgagccccaagcaaaagcaattatttcgtctatgcagacaaag ggattttccttgatccaaggaccgcctggaaccggaaagacatggacaatattgggctta gttggcgcatttctatcatcacgtcgtacaccgcctaagctaatcgcgattcctggtaag gctccaccgcctgcaccaaaacctgcttctcagaagcttcttatctgtgccccgagtaat gctgctgttgatgaaatcacgaagcgtctcatcgagggagtccgtggtcccaatggccag cgtttatcacctaaggtagtcagggtaggtgccgactcgcagattaacgtcagcgccaag gaggtttcgctcgataccctggttgaagctaaaatgaactcggatggtggtaatcctcat ggagatggtgctggtgatgcgaaaaatctacgtgcagaactcgaacaggtgaaggaagcc aggcagaagaaaattgaggaactacagagtaccatcaataatacgtccaggatccaaatg ctagaaaacgaaatcaggggtctgaatgataaacggattggtctctcccagaaactcaat cagcttcgggataagatgaagtcgcagaatcgatctatagacgccatccgacgaaaatac cgacatgagattctgggcgctgcagacatcatatgtagcacgttgtctggtgccggtcat gagcagctcgagcctttcgacttttccatggtcatcattgatgaagccgctcagtcaatc gagttgagctcgttaattcctttgaaatacactagtactagatgtgtcatggttggagat cctcaacagctaccgcctactgttctgtcgccagaagcatcgaaatggggctacgaccaa tcactttttgttcgtctgcagaaatgcaggcccgaagccgtgcatttgctaagcatacag taccgtatgcatcctgagatcagccttctaccaagcaaggtattctatggtggccgcctt cgagatggtcctgacatggataagaagactgagcagctgtggcataacgaacctcgattc ggagcttataaattcttcagcgtggagaacgggaaggaggaacaagctcgcatcggccat tccatttataatcaagctgaatgcaggacgataattgctgcgtatgatcgactacggaag cagttctcttcaatcaacttcgattatcgcgtcggaattgtttctccgtatcgatctcag gtgctggagatgcggaagttatttacgcaaagattcggagctgagattgttagcaaggtg gacttcaacacagtcgatgggttccaaggccaggagaaggatatcattatgctatcctgc gtacgtgctggtacttctcttgcaacggtcggattcttagctgacattcgtcgcatgaac gtcgcgattacgcgtgcgaggtcatccctcttcatctttggccatgctccaactctgcaa cggagcaacagggtctggaaagacatcgttgatgatgcacgttcacgtgcatgtttcgtt gagctagtacgtgcttga

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