Flavobacterium magnum: HYN48_03760
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Entry
HYN48_03760 CDS
T06478
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
fmg
Flavobacterium magnum
Pathway
fmg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fmg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HYN48_03760 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fmg03019
]
HYN48_03760 (rnr)
03016 Transfer RNA biogenesis [BR:
fmg03016
]
HYN48_03760 (rnr)
Enzymes [BR:
fmg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
HYN48_03760 (rnr)
Messenger RNA biogenesis [BR:
fmg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HYN48_03760 (rnr)
Transfer RNA biogenesis [BR:
fmg03016
]
Prokaryotic type
tRNA degradation factors
HYN48_03760 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
OB_Dis3
OB_RNR_1st
S1
OB_HELZ2
HTH_11
S1_2
CENP-B_N
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
AWA29275
UniProt:
A0A2S0RCB3
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All DBs
Position
914100..916283
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AA seq
727 aa
AA seq
DB search
MSQKPRKFGKKEKDFSGKILKILAAHANKGFNYKQIAAILDVDDTKSRNEIIKDLKILAS
QQKIIESEPGKYLVKAISKDYYEGTIDMTSRKTAYFICKDEFAEDVFIPTNNLNRALDGD
TVKVYVYNRRKGKRPEGEVIEVVSRKKTEFVGVIDIQKNFAFVSTANAKMYTDIFIPKDK
IGDAEQGDVVIARIEDWPKKADSPFGSIIKILGKPGEHDTEIHAILAEYGLPYDFPVEVE
VFAQKLDTEIHTEEIARRRDMRDTLTFTIDPKDAKDFDDALSFKKLDNGNYEIGIHIADV
SYYLQEGTILDDEAYQRGTSVYLVDRVVPMLPEVLSNFACSLRPHEEKYTFSAIFEINQK
AQVVNQWFGRTVIYSDQRFAYEEAQYIIETKDKTIPADISLTGQAYRVPDAIAEATLKLD
ELAKILRSKRMADGAISFDKVEVKFNLNENDEPIGVYFKQSKDSNHLIEEFMLLANRKVA
EFIGKQNKTFVYRIHDEPNEDKLIGLQGIISKFGYSINFKSKKDISKSLNELLVNVNGKK
EQNLVDTLTIRSMSKAKYSTDNIGHYGLAFDYYSHFTSPIRRYPDVMVHRLLQFYLDGGK
SVDAEVYEEKCVHASSMESLATSAERDSIKYMQVKYMQDHQDQEFLGVISGVTEWGIYVE
IVENKCEGMCRIREIRDDYYTFDEKQYALVGEVSKRLLQLGDEVFVKVKNADLVKKQLDF
HFIRRNE
NT seq
2184 nt
NT seq
+upstream
nt +downstream
nt
atgagtcaaaagccaagaaaatttggaaaaaaagagaaagacttctccggaaaaatatta
aaaatccttgcagcccacgccaataaaggattcaactataagcagattgctgccatcctg
gatgtagacgacaccaaaagccgaaatgaaattatcaaggacctgaaaatccttgcctca
cagcaaaaaatcattgaatcagagccggggaaataccttgtaaaggccatcagtaaagat
tattacgagggtactatcgacatgaccagccgcaagacggcttattttatttgtaaagat
gagtttgcggaagatgtctttattccgaccaataacctgaatcgcgcccttgacggcgat
acggttaaagtatatgtgtacaaccgtcgtaaagggaagcgtcctgaaggtgaagtgatt
gaagtcgtctcacgcaagaaaacggaatttgtcggggtgatcgacatccagaagaatttt
gcgtttgtatcgaccgccaatgcgaagatgtataccgatattttcatcccaaaagataag
attggcgatgcggaacagggagacgtcgtcattgcccgaatagaggattggccgaaaaaa
gccgacagcccgtttggatccatcatcaaaatccttggaaagccaggcgagcacgacacc
gaaatccacgccattttagccgaatacggactgccatacgattttcctgtagaagtggaa
gtgtttgcacaaaagcttgacactgaaatccacactgaggaaattgccaggcgccgcgac
atgcgcgatacgctcacctttacgattgatcctaaagatgcgaaagatttcgacgatgca
ttgtcgtttaaaaaattagacaacggcaattatgagatcggaatccacattgccgacgta
tcttattatctgcaggaaggaacgatcctcgatgatgaggcttaccagcgcggaacgtca
gtataccttgtcgaccgcgtggttccaatgcttcccgaagtgctgtcgaattttgcgtgt
tcgctgcgtccgcatgaggaaaagtatacgttttcagcgatttttgaaatcaaccagaaa
gcgcaggtcgtcaatcaatggttcggacgcacggttatttattcagaccagcggtttgcg
tacgaagaagcgcagtacatcattgaaacaaaggacaagaccatcccggcagatatttca
ttgaccggccaggcgtacagggtgccggacgccattgctgaagcgaccctgaaactggat
gaactcgctaagatcctgcgcagcaaaaggatggcagacggcgcaatctcattcgataag
gtggaggttaaattcaacctgaatgaaaatgatgaacccatcggcgtttattttaagcaa
agcaaggattcaaaccaccttatcgaagagttcatgttgctggcaaaccgcaaggtggct
gagtttataggcaaacaaaacaagacttttgtttaccgtatccacgatgagcccaatgaa
gacaagctgatcggcttacaggggatcatatcaaaattcggttacagcatcaattttaaa
tcgaaaaaggacatctcaaaatcactcaatgaattgctggttaacgtaaacggtaaaaag
gaacagaacctggtcgatacccttacgatccgaagcatgagcaaagccaaatattctacg
gataacatcgggcattatggtctggcattcgattactactcgcactttacctcgcccata
cgccgttatcctgatgtgatggttcaccggctgctccagttttatctcgacggcggtaaa
tcagtagacgcagaagtgtatgaggaaaaatgcgtgcacgcctccagtatggaatccctg
gctaccagtgctgagcgggacagcatcaagtacatgcaggtcaagtatatgcaggaccat
caggatcaggagttcctgggtgtaatatccggtgtgactgagtggggaatttatgtagaa
atcgttgaaaacaaatgtgagggtatgtgccgcatccgtgagatccgggacgactattac
acgtttgacgaaaagcagtatgccctcgttggggaagtgtcaaagaggctgctccaactg
ggagacgaagttttcgtgaaggtaaagaatgcggacttggtcaaaaagcagcttgatttc
cacttcatcaggcgcaacgaataa
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