Flavobacterium magnum: HYN48_04100
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Entry
HYN48_04100 CDS
T06478
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
fmg
Flavobacterium magnum
Pathway
fmg03410
Base excision repair
fmg03430
Mismatch repair
fmg03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
fmg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
HYN48_04100 (recJ)
03430 Mismatch repair
HYN48_04100 (recJ)
03440 Homologous recombination
HYN48_04100 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fmg03400
]
HYN48_04100 (recJ)
DNA repair and recombination proteins [BR:
fmg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
HYN48_04100 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
HYN48_04100 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HYN48_04100 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
Motif
Other DBs
NCBI-ProteinID:
AWA29334
UniProt:
A0A2S0RCI3
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All DBs
Position
997101..998792
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AA seq
563 aa
AA seq
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MRWTLKPSPAPEKVQSLSQSLHVEPLVALLLIQRGIETYDQARQFFRPSLDDLHNPYLMK
DMDKAVLRIEKAIENSENILVFGDYDVDGTTAVSLVSSYLKTIYPNVATYIPDRYAEGYG
ISFAGIDYADDNGVSLIIALDCGIKSVEHVAYAKSKNIDFIICDHHRPGDTLPDAVAVLD
PKRADCHYPYDELCGCGVGFKLIQAMGAGRGQTIDDLLPYLDLVAVAIAADIVPITGENR
ILAHFGLQVINSFPRNGIKALVYLSKKQNFDITDVVFIIAPRINAAGRIRHGNHAVELLT
EADFDQAVLYASEIEKYNADRKELDKQITTEALAQIEQNREQEDYTTVVFNAGWHKGVIG
IVASRLIETYYRPTIVFTESGEKYAASARSVSGFDVYDALERCSEHLEQFGGHKYAAGMT
LKKESYSRFKTAFEQCVRDTILPELRTPEIEIDAAIDFSQITPKLTRILKQFEPFGPMNM
APVFVARQVTDTGFAKKIGQDEAHLKLFLKQGDSEGFAAIGFGLGKKAAVAADRKPFDVV
FCIDENEWQGAVSVQLRVKDIGN
NT seq
1692 nt
NT seq
+upstream
nt +downstream
nt
atgcgctggacactcaaaccttcaccggcacctgaaaaggtgcaatccctttcgcagtcc
ttacacgtcgaaccattggtcgccttactgctgatacaacgcggcattgaaacctatgac
caagcgcggcaatttttcaggccgagtctcgacgacctgcacaatccgtacctgatgaag
gatatggacaaggcggtgctgcggattgaaaaagccattgaaaacagcgaaaacatcctg
gttttcggcgattatgatgtcgatggcaccacagccgtttcgctcgtttcctcatacctc
aagacgatttacccgaacgtggccacctacatccccgatcgatacgccgaaggctatggc
atttcgttcgcgggcatcgactatgcggatgacaacggcgtatcgttgattatcgcgttg
gactgcggcatcaaatcggtggagcatgtcgcgtacgccaaatccaaaaacattgacttc
atcatatgcgaccaccaccgccccggcgataccttacctgacgcagtggccgtcctggac
ccgaagagggccgactgtcattatccgtacgacgagctttgcggctgcggcgtcggattc
aagctgatccaggcgatgggtgccgggcgaggccagaccattgatgatctgctgccgtac
ctggatctggtggccgtagccatcgctgcggatattgtcccgattaccggagaaaacagg
atcctggcgcatttcggattgcaggtaatcaattcgttcccgagaaacgggattaaggct
ttggtatatttgtccaaaaaacaaaatttcgacatcactgatgtggtgtttatcatcgcg
ccgcggatcaatgccgcaggtaggatccgccatgggaaccacgccgtggaactgcttacg
gaagcagacttcgatcaggctgtcctgtacgcttcggaaatcgaaaaatacaacgccgac
cgaaaggagctggacaaacagattacgaccgaggcgctggctcagattgagcaaaaccgg
gaacaggaagattataccacggtggtcttcaatgcaggctggcacaaaggcgtcattggt
attgtcgcctcgcgcctgattgaaacctattaccgcccgacaatcgttttcactgaatcg
ggtgaaaaatatgcggcatcggcaagatcggtgagcggttttgacgtatacgatgcgctg
gagcgttgttcggagcaccttgaacaattcggagggcacaagtacgctgcgggcatgacg
ctgaaaaaggaaagctactcccggttcaagacggcttttgagcaatgcgtgcgcgatacg
atcctgcctgaactgcgcacccccgaaatagaaatcgatgcggcgattgacttttcgcaa
atcaccccaaaactcacccggatcttaaagcaatttgagccgttcggcccgatgaacatg
gcgccggtattcgtggcacgacaggtgaccgatacgggttttgcaaagaaaatagggcag
gatgaggcgcacctgaaactgtttttaaagcagggtgattcggaaggatttgccgctatc
ggattcggactcggaaaaaaggcggctgtcgctgcagaccgcaagccgtttgatgttgtt
ttctgtattgatgaaaacgagtggcaaggcgctgtgagcgtgcagctgcgggtgaaggat
atcgggaactaa
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