Flavobacterium magnum: HYN48_09320
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Entry
HYN48_09320 CDS
T06478
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
fmg
Flavobacterium magnum
Pathway
fmg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fmg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HYN48_09320
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fmg03019
]
HYN48_09320
03009 Ribosome biogenesis [BR:
fmg03009
]
HYN48_09320
Enzymes [BR:
fmg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HYN48_09320
Messenger RNA biogenesis [BR:
fmg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HYN48_09320
Ribosome biogenesis [BR:
fmg03009
]
Prokaryotic type
rRNA helicases
HYN48_09320
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Cas3-like_C_2
RecG_N
Motif
Other DBs
NCBI-ProteinID:
AWA30265
UniProt:
A0A2S0RF65
LinkDB
All DBs
Position
complement(2225438..2227321)
Genome browser
AA seq
627 aa
AA seq
DB search
MNKFEQLGLKESLNRAIIDLGFENPTEVQEKAIPMLLEQDTDLVALAQTGTGKTAAFGFP
LIHKIDADNRNTQALILSPTRELCLQITNEIKNYSKYEKGINVVAIYGGASITEQAREIK
RGAQIIVATPGRMQDMINRGLVNITQIDYCVLDEADEMLNMGFYEDIVSILSDTPDEKST
WLFSATMPAEVARIAKKFMENPIEITVGTKNSGSATVSHEFYLVNARDRYEALKRLADAN
PDIFSVVFCRTKRDTQQVAEKLIEDGYNAAALHGDLSQAQRDSVMKSFRGRQIQMLVATD
VAARGIDVDNVTHVVNYQLPDEIETYNHRSGRTGRAGKLGTSIVIVTKSELRKISAIEKI
IKQKFEEKTIPSGIEICEIQLLHLANKIKDTEVDHEIDNYLPAINNVLEGLSKEELIKKM
VSVEFNRFINYYKKTRDLSAQSAGKRDDREPRENSGGAVRYFVNIGSRDDFDWMQLKDFL
KETLDLGRDDVYKVDVKEGFSFFNTDPEHTDKVMEILNNVTLGGRRINVEISKNDGGGRR
DHNGRSGGFGAERGGRSFGGDRGSKSFGGGFKSDKPSRFSSERAGSSETRFSRPETPRRE
GKFTSERAPRRSESFSDQSRPKRPRKG
NT seq
1884 nt
NT seq
+upstream
nt +downstream
nt
atgaataaatttgaacaattaggattgaaagagtcgctgaaccgtgcgattatcgatctg
ggatttgagaatccgaccgaagtgcaggaaaaagcgattccaatgctattggaacaagac
actgatttagttgcgttagcccagacagggacagggaaaaccgcagcttttggctttcca
ctgatccacaagatcgacgctgacaacagaaatacacaggcgttaatcttatcacctacc
cgcgaactttgtttgcagatcactaacgagatcaagaattactcgaagtacgaaaaagga
atcaatgtcgtagccatctacggcggtgccagcattacggaacaggcgcgcgaaatcaag
cgcggcgcgcagattatcgtcgcgactccgggaaggatgcaggacatgatcaaccgcgga
ttggtcaacattacccaaattgattactgcgttttggacgaagcggacgaaatgctcaat
atgggcttctatgaagacatcgtttccatattatccgacacgcctgacgaaaaaagcacc
tggcttttctcagcgaccatgcctgccgaagtggcgcgcatcgccaagaaattcatggaa
aatccgattgaaattactgtcgggacgaagaattcaggttccgctacagtatcgcacgag
ttttacctcgtcaacgcgcgtgaccgttacgaagccttgaaacgcctggccgatgccaat
ccggatatcttttccgtggttttctgtcgcaccaaaagggacacgcagcaggtggcagag
aaattaatcgaggacggttacaacgcagccgcattacacggcgatttgtctcaggcccag
cgtgactcggtaatgaagtcattccgtggtaggcaaatccagatgctcgtagcgacggat
gttgccgcgcgtggtatcgacgtagacaatgtgacgcacgtggtaaattaccagcttcct
gacgaaatcgaaacctacaaccaccgttcgggccgtacaggacgtgcagggaaattaggc
acctcgatagtcattgtaacgaaaagtgaattgcgcaagatttctgccattgaaaaaatc
atcaagcagaaatttgaggagaagacaatcccatcgggaattgaaatctgtgaaatccag
ctgttgcacctggccaacaagattaaggataccgaagtggaccacgagattgacaactac
cttccggccatcaacaacgtattggaaggcctttctaaagaagagctgatcaagaaaatg
gtgtcggtcgaattcaaccgatttatcaattactataagaagacgcgcgacctttcagcg
cagtctgccggaaaacgtgacgatcgtgaaccgcgtgaaaactcgggcggcgccgtgcgt
tatttcgtaaatatcggttccagggatgatttcgactggatgcagttgaaggatttcctt
aaggagacattggatctgggccgcgacgatgtatataaagtggacgtcaaggaaggattt
tctttctttaacaccgatccggaacacaccgacaaggtaatggaaatcctcaataacgta
acgctgggcggacgacgaatcaatgtcgaaatttccaaaaatgacggcggcggacgcagg
gaccacaacggaagaagcggcggattcggcgcagaacgcggcggaagaagtttcggcggt
gatcgcggcagcaagagctttggcggcggtttcaaaagcgacaaaccgtcacgattctcg
tcagaaagggccggcagcagcgaaaccaggttcagccgtccggagacgccaagacgcgag
gggaaattcacctcggaaagggcgccaaggcgttctgaaagcttcagcgaccagtcgagg
ccgaagcgtccgcgcaaaggctaa
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