Flavobacterium magnum: HYN48_15055
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Entry
HYN48_15055 CDS
T06478
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
fmg
Flavobacterium magnum
Pathway
fmg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fmg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HYN48_15055
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fmg03019
]
HYN48_15055
03400 DNA repair and recombination proteins [BR:
fmg03400
]
HYN48_15055
Enzymes [BR:
fmg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HYN48_15055
Messenger RNA biogenesis [BR:
fmg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HYN48_15055
DNA repair and recombination proteins [BR:
fmg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
HYN48_15055
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
TrmB
TFIID-18kDa
Imm42
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AWA31304
UniProt:
A0A2S0RHY9
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All DBs
Position
3429654..3431558
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AA seq
634 aa
AA seq
DB search
MPTAVEILKNYWNHDRFRDLQQDIIDAAMDKRDTFALLPTGGGKSICFQVPALMQDGLCL
VISPLVALMKDQVANLQKRNIKAIALTGGLRTEEVSDLLDNCQFGNYKFLYLSPERLQSD
WIIERLKSLSINLIAIDEAHCVSQWGHDFRPAYLKIANLRNHFNKVPFMALTASATPKVQ
QDIISGLGMKEVSVFQKSFERKNIAYMVFETEDKLHRITQILKKNPEPSIIYVRNRKSCH
DMSSQLQSLGFSATYYHGGLPAAEKSRNMQSWMEEKAQVIVATNAFGMGIDKGNVKNVIH
VQLPENIESYYQEAGRAGRNEEKAFAVLLYHRSDTTQARSQFISVLPDKEFLTRVFVKLC
NYLRIAYGEGIDERFGFNLNHFCTQYDFPVLKTYNALQFLDRQGVVSLSQEFSEKVSVQF
LADSREVLRYTSLNPQDEPVILTILRNYSGIYDAPCALNLSLVSKKSGSPEDQILTVLKK
LQERGLIDYKARSNDATLVFNEIREDEKTINRLSKYLEMQNRQKKDQLQSVLDYVTDDDT
CRQRLILRYFGEDKIQDCGICSFCIGKNRKPVRASRVSVATEIHDLLQTQSLNSREIQNH
IKHPPDDVIFALRQLLDHDIIRIGTDNRYSIRKT
NT seq
1905 nt
NT seq
+upstream
nt +downstream
nt
atgcctaccgccgttgaaatcctcaaaaattactggaaccacgaccgtttccgggacctg
caacaggacatcattgacgctgccatggacaagcgggatacttttgcactattgcctaca
ggcggtggaaaatcaatttgtttccaggtccccgcattgatgcaggacggcctctgtctt
gtgatatcaccgctggttgccctgatgaaggaccaggtagccaatctgcaaaagcgaaac
atcaaggccattgcactcacgggcggactccgcacagaagaggtttcggacctgctcgac
aactgccaattcggaaattataaattcctgtacctgtcacccgaaaggctgcagtctgac
tggattatagaacgcctgaaaagcctctcaatcaaccttattgccatcgatgaggcgcat
tgtgtgtcacaatggggacatgatttccgtcccgcataccttaagatagccaacctcagg
aaccatttcaacaaagtaccttttatggcgttgactgcttcagcgaccccgaaagtacaa
caggacatcatctccgggctcggcatgaaagaggtatccgttttccaaaaatcatttgag
cggaagaatattgcatacatggtttttgagacggaagacaagctgcaccgcatcacgcaa
atcctgaaaaaaaaccccgagccgtcaatcatttatgtccgcaaccgcaaatcatgtcat
gatatgtcatcgcagctgcaatcgctgggtttttcggcgacgtattatcacggcggactc
ccggccgcggaaaaatcaaggaacatgcagtcatggatggaagaaaaagcacaggtcatc
gtagccacgaacgcatttgggatgggtatcgataagggcaatgtcaaaaacgtaatccac
gtccagctgcctgaaaacatcgaaagttattaccaggaagcgggacgcgccgggcgtaat
gaggaaaaagcatttgcggtgctgttgtaccatcggtcggacacgacacaggcccgcagc
cagtttatctcggttttgcctgataaagagttcctgaccagggtatttgtcaaactctgc
aactaccttcgcatcgcctacggggaaggaattgacgaacgctttggcttcaacctgaac
catttttgcacacaatatgatttcccggtattgaaaacctacaacgcattgcagttcctc
gaccggcagggcgttgtaagtctttcacaggaattttcggaaaaagtatcagtccagttt
ctggctgattcaagagaggtgctgcgttacacgagcctcaatccgcaggacgagccggtc
atcctgacaatactgcggaattacagcgggatttacgatgcgccgtgtgcactgaacctg
agtcttgtctcaaaaaaaagcggttcgcccgaagatcagatcctaaccgtgttgaagaaa
ttgcaggagcgcggactgatcgattacaaagcgcgcagcaatgatgccacgctggttttc
aacgagatcagggaagatgaaaaaaccatcaatcggctgtcgaaatacctggaaatgcaa
aaccgccaaaaaaaagaccaactgcagtcggtgttggattatgtaaccgacgacgatacc
tgcaggcagcgcctgattttacgatatttcggcgaagacaaaatccaggattgcggaatc
tgttcgttctgcatcgggaagaaccggaaaccggttcgtgcttcccgggtgtcggtagcc
accgaaatccacgacttactgcagacacagtcgttaaattcgcgcgagatccaaaatcat
atcaaacatccgccggacgacgttatctttgcactcagacaactgctcgaccatgacatt
atcaggatcgggacagacaacagatacagcattaggaaaacatga
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