Francisella marina: F0R74_03420
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Entry
F0R74_03420 CDS
T06206
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
fmi
Francisella marina
Pathway
fmi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fmi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
F0R74_03420
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fmi03019
]
F0R74_03420
Enzymes [BR:
fmi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
F0R74_03420
Messenger RNA biogenesis [BR:
fmi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
F0R74_03420
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
AAA_19
AAA_30
MerR-DNA-bind
HI1480
AAA_22
Flavi_DEAD
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
QEO58185
UniProt:
A0ABX5ZIT3
LinkDB
All DBs
Position
complement(687595..688932)
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AA seq
445 aa
AA seq
DB search
MQFSDLGLNPLICSALEKKGYTKPTPIQAKAIPLVLKGNDVMASAQTGTGKTAGFTLPII
QRLLDQPKAQANRIKTLILTPTRELAAQIQEQIQIYAANTHIRSAVVFGGVSINPQMMKL
RKGVEILIATPCRLLDLYSQNALKFDSLNTFVLDEADRMLDMGFINDLKRIHKLLPKKLQ
TLMFSATFSPEIKNLASEFLDNPQSVSADVVNTTVKKITQKIYTLDKSTKINALISLIKD
QDLHQVLVFSRTKHGANKISEKLNKASITSSAIHGNKSQTARTKALADFKSKDINVLVAT
DIAARGIDIAQLPCVINLDLPNVAEDYVHRIGRTGRAGQDGLAISLVSADEVESLSNIEH
LIGHLLPREELEGFEATHNVPITSMSRKTKAKKIDEVKIIAAKRANKNNKNTNQKKSSSH
NKDFAKKIKQKIHQNKSVRKPKAQD
NT seq
1338 nt
NT seq
+upstream
nt +downstream
nt
atgcaattctcagatttaggtttaaatcctttaatatgtagcgctttagaaaaaaaaggc
tatacaaaaccaactccaattcaagccaaagcgattccattagttctaaaaggtaatgat
gtcatggcatctgcccaaacaggaacaggcaagacagcaggcttcacattaccgattatc
caaagacttcttgatcaaccaaaagctcaagcaaatcgaatcaaaactctaatcctaact
ccaacaagagagctggcagcacaaatacaagaacaaattcaaatatatgcagcgaatact
catattcgttcagcagtggtttttggtggtgttagtatcaatcctcaaatgatgaagtta
cgcaaaggagttgagattttgatagcgactccgtgtaggttacttgatttatatagtcaa
aatgctcttaaatttgatagtttaaatacatttgttttagacgaagcagacagaatgtta
gatatgggttttattaatgatttaaaaagaattcataagcttttaccaaaaaaattacaa
acattaatgttctcagctacattttcaccagagataaaaaatcttgcaagtgagtttctt
gataatcctcaatcagtatcagcagatgttgtaaatacaacagtcaaaaagattacgcag
aaaatttatacactagataaatcaactaagattaatgctctgatttcactaataaaagat
caggatctacatcaggttttggttttttcgcgtacaaagcatggcgctaataagatatca
gagaaactaaataaagctagtataacaagtagtgcaatacatggtaataaaagccaaaca
gctagaacaaaggcattagcagattttaaatccaaagatataaacgtcttagttgcaacc
gatattgcagcacgtggaattgatattgcccaactaccatgtgtgatcaatcttgatcta
ccaaatgtggctgaagattatgttcatagaataggcagaactggtagagcagggcaagat
ggtctagctatttctttagtaagcgcagatgaagttgaatcactatcaaatatagaacat
ttaattggacatctgttaccacgagaagagttagaaggttttgaggctactcataatgta
cctattacaagtatgtcacgtaaaactaaggctaaaaaaattgatgaagtcaaaataata
gcagccaaaagagctaataaaaataataaaaacactaatcaaaagaaaagctcaagccat
aataaagattttgcaaaaaagataaaacaaaaaattcatcagaataaaagtgttagaaag
ccaaaggctcaagattaa
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