Francisella marina: F0R74_05025
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Entry
F0R74_05025 CDS
T06206
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
fmi
Francisella marina
Pathway
fmi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fmi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
F0R74_05025
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fmi03019
]
F0R74_05025
03009 Ribosome biogenesis [BR:
fmi03009
]
F0R74_05025
Enzymes [BR:
fmi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
F0R74_05025
Messenger RNA biogenesis [BR:
fmi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
F0R74_05025
Ribosome biogenesis [BR:
fmi03009
]
Prokaryotic type
rRNA processing factors
F0R74_05025
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Anti-TRAP
Antiterm
DnaJ_CXXCXGXG
Flu_C_NS1
Motif
Other DBs
NCBI-ProteinID:
QEO57249
LinkDB
All DBs
Position
1022608..1025283
Genome browser
AA seq
891 aa
AA seq
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MKKILINSKSSEETRIATLDNGKLIDLDIENVDREQKKANIYKGYISRIEPSLNAIFVNY
GEDKNGFLPFKEVSEYYLKDVPNGENIAPLLSEGQELIVQIDKEERGDKGAALTTFITLA
GSYMVLLPNNPDGGGISRRVEGEDREKLKKYLKDLNIPKSMSVIARTACVECSFEELKHD
FDNLVELWSSIFKAYHKIKKPALLHKESDIIVRTVRDHLKEDVKEIIVDSKECFADVKRQ
LGLLRQSFDTNKVKLYNEELPIFAQFGIDQQIENAYKREIRLPSGGSIVIDTTEALVAID
VNSSRANKAEDVETTAFKTNLEAAEEVARQLRIRDLGGLVIVDFIDMSFYPNRKQVEEKL
MEALQQDKARIQMSRISKLGLVEISRQRLSSSINESVMQKCPRCDGHGFIKTTQATALTI
LRKIRAEAIKEDTNEIRVQVPVDIAAYILNEKRDSIVEIERISEVKIMLIPNFNMESPKF
QMQRIWGASYKSNRTSSDLIEDVYNVEIPKAGKKKVAAVELSKTTSNSQNQAPKEDKKAQ
DNIANKNTQNTKKEAIKEEPKKKSFLSKLLGKLGGNAEDTTIEKTKPQDKQHKNKGQKPQ
HPKSQDNRQERDNSQRNDRKNDNKNDRSDNKNNNKGQKPQHQKSQDNRQERDNGQRTDRK
NNDNKNDRNKNDRNKNRSNDKFDKKSNNRSNNRSNNLNLNNAEEVVDITQLKYQNQTAEK
TDNIKKVISKNPEEFVSVMVKDVLENYDSLKDDGATKVATQERAKTNKYLKFDTVSVDKE
ISTLKAAQQASNVEADNKKIIETDNVQEEQVKETVEVVDKVVVKEEQPKRIKKIDKSNET
SEQNDLKKEKPKAAKNNKKEKVVEKANKQDQIKPEYINYSPAIDFESQTII
NT seq
2676 nt
NT seq
+upstream
nt +downstream
nt
atgaagaaaatactaataaatagtaaaagtagtgaagaaacaagaattgctactctagat
aacggaaaacttattgatctagatatcgaaaacgtagatagagaacaaaagaaagctaac
atttacaaaggttacatatctagaattgaacctagcttaaatgctatatttgttaactat
ggtgaagataaaaatggttttttaccatttaaagaagtttctgagtattatctaaaagat
gtgccaaatggtgaaaatatagcacctcttctctctgaaggacaagaattaatcgtacag
attgacaaagaagagcgtggtgataaaggtgctgcactaactacatttatcacactagct
ggttcatacatggttttactgccaaacaacccagatggtggcggaatttctcgtcgtgtt
gaaggtgaagatagagagaaattaaaaaaatatctaaaggacttaaatatccctaaaagt
atgagcgtaatcgcaagaactgcttgcgtagaatgctcatttgaagaattaaagcatgac
ttcgacaatctagttgaattatggagctcaatattcaaggcttatcacaaaatcaaaaag
cctgccctacttcacaaagagagcgacataattgtaagaacagttagagatcatctaaaa
gaagatgttaaagaaattattgtagactctaaggaatgttttgcagatgttaaaaggcag
cttggtctacttagacaaagcttcgatacaaacaaggttaaactatacaacgaagagcta
ccgatatttgctcaatttggtatcgatcaacagatagaaaatgcatacaagagagagatt
agattaccttctggtggatctattgttattgatactacagaagctttagttgcgattgat
gttaactcatctcgcgctaacaaagcagaggatgtagaaactactgctttcaaaacaaac
ttagaagctgctgaagaagttgctcgtcaacttagaattagagatcttggtggtcttgtt
atcgttgactttatcgacatgtcattctatccaaatagaaagcaagttgaagaaaagtta
atggaagctctacagcaagataaagcacgtatccaaatgtctcgtatatctaaacttgga
cttgttgagatctctagacaacgtttgagttcatcaatcaacgagagtgtaatgcaaaag
tgtcctcgttgtgacggccatggctttattaaaactactcaagctacagcacttactatt
ttacgtaaaatcagagcggaagctatcaaagaagatactaatgaaatacgtgtccaagta
cctgtggatatagctgcatatatcctaaatgagaaaagagatagtattgttgagattgaa
agaatctctgaagttaaaataatgctaatccctaacttcaacatggaatctccaaaattt
caaatgcaaagaatctggggagcaagctacaagtctaatcgtacaagctctgatttgata
gaagatgtatacaatgttgaaattcctaaagcaggtaaaaagaaagtagccgctgtggag
ctaagtaagacaacatcaaacagtcaaaatcaagctcccaaggaagataaaaaagcccaa
gacaatatagctaataaaaatactcagaacactaaaaaagaggctatcaaagaagaacca
aagaaaaaaagttttttgagtaaattgctaggtaaacttggtggtaatgctgaagatacg
actattgagaagactaagcctcaagataaacaacacaaaaataaaggtcaaaagcctcaa
cacccgaaatctcaagataatagacaagaaagagataacagccaacgtaatgaccgtaaa
aacgataacaaaaacgatcgtagtgataataaaaataataacaaaggtcaaaagcctcaa
catcagaagtctcaagataatagacaagaaagagataacggccaacgcactgaccgtaaa
aataatgacaacaagaatgatcgcaataagaatgatcgtaacaaaaatagatcaaatgat
aaatttgataaaaagtcaaataaccgtagcaataacagaagcaataacttgaatcttaac
aatgctgaagaagttgtcgatattactcagctcaaatatcaaaatcaaacagctgaaaaa
actgataacatcaaaaaagtaatatctaaaaaccctgaagagttcgtctctgttatggtt
aaagatgttttagaaaattatgatagcctaaaagatgatggagctactaaggttgctact
caggaaagagctaaaacaaataaatatctaaaatttgatactgtttctgtagataaagaa
ataagtactttgaaagctgcacaacaagctagtaatgtagaagctgataataaaaaaatt
atagagactgacaatgttcaagaagagcaagtaaaagaaacagttgaagtagtagataaa
gttgtcgtcaaagaggagcagccaaaaagaataaaaaaaatagataaaagtaatgaaact
tctgaacaaaatgatcttaaaaaagaaaagcctaaagctgctaaaaataataaaaaagag
aaagtggtagaaaaagctaataaacaggatcaaattaagccagaatatataaattactct
ccagctattgattttgagtctcagacaataatctaa
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