Fulvivirga maritima: LVD15_07165
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Entry
LVD15_07165 CDS
T09268
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
fmm
Fulvivirga maritima
Pathway
fmm03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
fmm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LVD15_07165 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fmm03400
]
LVD15_07165 (mfd)
Enzymes [BR:
fmm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LVD15_07165 (mfd)
DNA repair and recombination proteins [BR:
fmm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
LVD15_07165 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
RecG_dom3_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
UII28197
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All DBs
Position
1699755..1703111
Genome browser
AA seq
1118 aa
AA seq
DB search
MKAGELLKLYKADSIIQTMAEVTKPNEDKCVQLKGLRGSLDAVLVAALYQINHQNHLIVL
HDKEEAAYFHSDLQNLLTGKEVLFFPTSYKRPYQFEETENANVLMRAEILNRVNHKASSG
EIIVTYPEALTEKVINKKSLLKNTFTAKIGEEVDIEFLAELLLSYDFEKTDFVYEAGQFA
VRGGIIDIFSYAQDLPYRLELFGSEIESIRTFDPSTQLSVEPVKEINLIPNVQTKLIAEE
RQGFIDFLPRNTKIWFKDYQQSIDVIEIYFDKAKESFDQILEESGDTQIVLDPSDLFETS
KSFKAQINELGKIEFGNRFYLKCSETFDFAAEPQPSFNKDFKLLSKNLSDNQDKGFTTLI
ASDSQQQLTRLHSIFEEIDHTSDFQDLNISLREGFIDQILKIACYTDHQLFERFHRYKTK
DKHSKSKALTLKELRTLQPGDFVTHIDYGIGKFAGLEKRESNGKEQEAIRLIYRDDDLLY
VSIHSIHKISKYTGKEGTPPAISKLGSPEWENKKKKVKKQVADIAKDLIELYAKRKKAPG
YAFSRDSFMQAELESSFIYEDTPDQAKATEDVKEDMQQQHPMDRLVCGDVGFGKTEIAIR
AAFKAVTDSKQVAVLVPTTILAMQHYNTFNDRLSSFPVKIEYINRFKTTKEIRETLKRVK
EGKTDILVGTHRIVSKDVQFKDLGLMIIDEEQKFGVKVKERLKELRVNVDALTLTATPIP
RTLHFSLMGARDLSIISTPPPNRQPVTTELHTFNEEIVRDAISYELRRGGQAFFVHNRVG
DIEEVANIILRLVPDSRVGIAHGQMDGPVLEKAMMKFIAGEYDVLVSTNIIESGLDIPNA
NTIIINRAHMFGLSDLHQMRGRVGRSNKKAFCYLLTPPTIALSSDARKRLSTLEEFSDLG
DGFKVAMRDLDIRGAGNLLGAEQSGFISDLGFDMYHKILDEAVQELKETEFKDLFVKELS
EAAKVIVQDCNIETDLEVIIPDEYVSNISERLSLYSKLDNIKTEEELKSFTESMIDRFGP
LPDSVKELIETVRLRWLAEKLGFEKLTLKSEKMKGYFVSSDKEEYFKSETFGRILAYVQT
NPKTCRLKEVKDKLILTIQEVLSVNQAIEILSQITGKK
NT seq
3357 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagcaggagaacttcttaaactatataaagcagatagtatcatccaaaccatggct
gaggtaactaagcctaatgaggataagtgtgttcaattaaagggattaagaggaagttta
gatgcagtgctagtagcagcattgtaccagatcaaccatcaaaatcaccttatagtactg
catgataaagaagaggccgcttactttcacagcgatcttcaaaacctactcacaggtaag
gaggtgttatttttccctacctcttataagcgcccctatcagtttgaagaaactgaaaat
gccaatgtgctaatgcgggcggaaatcctcaacagggtaaatcataaggcatcatctggt
gaaattatagttacttaccctgaagctttaaccgaaaaagtaatcaataaaaaatcatta
ttgaaaaacacttttacagctaaaataggtgaggaggttgatattgaattcctcgctgaa
ttactgctttcttatgattttgaaaaaactgactttgtttacgaagcaggccagtttgcg
gttagaggaggcattattgatatcttcagttacgcacaagatcttccataccggttagag
ctatttggtagtgagattgaaagcatcagaacatttgatccttctacacaactttctgta
gagcctgtgaaggagatcaatctgattcctaacgtgcaaaccaaactgatagctgaagaa
cgacaaggttttatagattttctaccaagaaatactaaaatctggtttaaagactatcag
caatcaatagatgttattgaaatctattttgataaagccaaagaaagctttgatcagata
ttggaagaaagtggtgacacacaaatagtgttagatccttcagatttatttgaaacttct
aaaagctttaaagctcaaatcaatgagctgggtaaaatagagtttggtaatcggttctat
cttaagtgcagtgaaacattcgattttgcggcagaacctcagccttcatttaataaggac
tttaagctgctctctaaaaacttatctgataatcaggataagggctttactacgcttatt
gcctcagactctcagcagcagcttaccagattacattccatatttgaagaaatagatcat
accagtgattttcaggacttgaacatcagcctgagagaaggcttcatagatcagatcctt
aaaattgcctgctatacagaccatcagctttttgagcgttttcacaggtataaaaccaaa
gacaagcattcaaaatctaaagcgcttactctaaaagaacttcgcactttacaaccgggt
gactttgtaacgcacatagattatggtatcggtaaatttgccggcctcgaaaaacgagaa
agcaacggaaaggaacaagaagccattaggcttatctatagagatgatgacttgctttat
gtaagtattcactccatacataaaatatcgaaatataccggtaaagaaggtactcctcct
gctattagtaagctgggttcaccagagtgggagaacaagaagaaaaaggttaaaaagcaa
gttgctgatatagccaaagacctgatagaattatacgctaaaagaaaaaaagcccctggc
tatgcctttagcagagatagctttatgcaggccgagctagaatcttcctttatttatgaa
gacactcctgatcaggctaaggccacagaagatgttaaggaagatatgcaacagcagcac
cctatggacaggctggtttgtggtgatgtagggtttggaaaaacagaaatagctatcaga
gctgcattcaaggcggtaactgatagcaagcaagtggctgttttggtgcccaccaccata
ttagccatgcagcattataatacttttaatgataggctttccagttttccggttaaaata
gaatacatcaaccgattcaaaaccaccaaagaaataagggaaaccttaaaaagggttaaa
gaaggcaaaactgatatattagtaggtactcaccgtatagtaagtaaagacgttcagttc
aaagatctgggcttaatgatcattgatgaagaacaaaaatttggtgtaaaggtaaaagaa
cgactcaaggaattgcgggtaaatgtagatgctcttacgcttacagctacgccaattcct
cgtacactacacttttcactcatgggtgcccgtgacttaagtattatttccacacctcct
ccaaaccgccagccagtaactactgagctgcatacttttaatgaggaaatagtgagagat
gccatcagctatgaattaagaagagggggacaagccttctttgttcataaccgagtggga
gacatagaagaagttgccaatattattctaaggcttgtgcccgactcccgagtaggcata
gcacacggtcaaatggatggcccagtgctggaaaaggctatgatgaaattcattgctgga
gaatatgatgtgctggtttctactaacattatagaatctggactagacatacctaatgct
aacaccattattattaaccgggctcacatgtttggcctttctgatctacaccaaatgcgt
ggtagagtaggaagaagtaataaaaaggccttttgttatttattaacacctccaaccata
gcactttcttctgatgccagaaaaaggcttagtaccctggaagaattctctgacttgggt
gatggctttaaagtagccatgcgtgatctggacattcgtggtgcaggaaacttattaggg
gctgagcaaagcggatttatttctgatcttggctttgacatgtaccataaaatactagat
gaggcggttcaggaacttaaagaaacggaatttaaagacttatttgtaaaagaactttct
gaagctgctaaggtaatagtacaagattgtaatatagaaactgacttagaggtaattatc
cctgatgaatatgtaagcaacatttctgaaagactgagcctatattctaagctggataat
attaaaacagaagaagagctgaagtcattcacagaatctatgatagatagatttggccct
ctgccagattctgtaaaagagctaatagaaacagtaaggttaagatggttagctgaaaaa
ctgggttttgaaaaactaacgcttaagtctgaaaagatgaagggttatttcgtaagctcg
gataaagaagaatattttaaatcagaaaccttcggcagaatcctcgcttacgttcaaacc
aacccaaaaacctgtagattaaaagaagtgaaggataaactaatccttactatacaggaa
gttttaagtgttaatcaggctatagaaatactaagccaaattacaggcaaaaaataa
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