Fulvivirga maritima: LVD15_11130
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Entry
LVD15_11130 CDS
T09268
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
fmm
Fulvivirga maritima
Brite
KEGG Orthology (KO) [BR:
fmm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
fmm03016
]
LVD15_11130
Enzymes [BR:
fmm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
LVD15_11130
Transfer RNA biogenesis [BR:
fmm03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
LVD15_11130
Prokaryotic type
tRNA splicing ligases
LVD15_11130
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
UII28950
LinkDB
All DBs
Position
2600948..2602369
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AA seq
473 aa
AA seq
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MATTKLTGKELKQIDYPEGRAIGEAQKAMEAGYKGKSKKFKLELLQRVVQNPALYLKHDQ
LGSIAKCLIIKEEAETVEQLNTKRIPYNTYGAEGIEPGAVNQMEIAMKLPVTHSGALMAD
AHQGYGLPIGGVLATKNAVIPYGVGVDIGCRMCMTLYDMPAVFEYESLSYYKKLLNDNSK
FGNAVFKRPKGHDVLDRAEFGEINILKSLKDRAYAQIGTSGGGNHFVEFGVAEIVDAENE
YGLPKGKYLAVLSHSGSRGLGANIARHYTKLAMDKCRLPAEAKHLAWLDLDTEDGQEYWL
AMNLAGDYASACHHQIHERMAVSLGEKPLAMIENHHNFAWKELDVEGNEIIVHRKGATPA
GKGVMGIIPGSMTSPGFIVRGKGEHAAINSASHGAGRVMSRRKAKAMITRDEVKSHLKHA
GVHVIGSGVDEAPMVYKDIHQVMAAQQDLVEVVGTFTPKVVRMCGDDRFAEVD
NT seq
1422 nt
NT seq
+upstream
nt +downstream
nt
atggcaacgacaaagttgacagggaaagaactgaagcaaattgactatccggaaggaaga
gccataggtgaagcccaaaaagcaatggaggccggatataaaggtaaaagcaagaaattt
aagctggagcttttgcagagagtagttcagaatccggcgctttatcttaagcatgatcag
ttaggatcaatcgctaaatgtttgattataaaagaggaggcagaaacagtagagcagtta
aataccaaaaggataccttataatacttatggtgctgaagggattgagcctggtgcggta
aaccaaatggaaatagccatgaagctcccggtaacacactcgggagcactgatggcagat
gctcatcaggggtatggtttgcctattggcggagtcctggctactaaaaatgcggtgatt
ccttatggtgtaggtgtagatatcgggtgtagaatgtgtatgaccttatatgatatgcca
gccgtatttgagtatgagagcttgagctattataaaaagctattgaatgataatagcaaa
tttgggaatgctgtctttaaaaggcccaaagggcatgatgtgctcgatagagcggaattt
ggagaaatcaatatccttaagtctttaaaggacagggcttatgcgcagataggaactagt
ggaggaggtaatcacttcgtagagtttggtgtggctgagatagtagatgctgaaaatgaa
tatggtttgccgaaagggaagtatttggctgttttgtctcactcaggttctagaggcttg
ggagctaatatagccaggcattataccaagttagctatggataaatgtaggcttccggct
gaagctaagcatttggcatggctagatcttgatactgaagatgggcaagaatactggctg
gcaatgaacctagctggtgattatgcctcggcatgtcatcatcagattcatgagagaatg
gctgtttcattgggtgaaaagccactggctatgatagagaaccatcataacttcgcctgg
aaggagctagatgtcgaaggtaatgagatcattgttcaccgtaaaggagctactcctgcg
ggtaaaggagtgatgggaatcatacccggatctatgacttctcccggatttatagtgaga
ggaaaaggagagcatgctgctatcaattctgcctctcacggagcaggaagggtcatgtct
aggagaaaggctaaagctatgatcaccagagatgaggtgaaaagtcatctgaagcatgcc
ggtgttcatgtaatcggttccggggtagatgaggctccgatggtatataaagatatccat
caggtaatggctgctcagcaggatttggtagaagtagtaggaacctttacccctaaagtg
gtgaggatgtgtggagatgataggtttgctgaagtggactaa
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