Fulvivirga maritima: LVD15_22325
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Entry
LVD15_22325 CDS
T09268
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
fmm
Fulvivirga maritima
Pathway
fmm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fmm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LVD15_22325
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fmm03019
]
LVD15_22325
03009 Ribosome biogenesis [BR:
fmm03009
]
LVD15_22325
Enzymes [BR:
fmm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LVD15_22325
Messenger RNA biogenesis [BR:
fmm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LVD15_22325
Ribosome biogenesis [BR:
fmm03009
]
Prokaryotic type
rRNA helicases
LVD15_22325
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_30
CMS1
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
UII26011
LinkDB
All DBs
Position
complement(5295905..5297620)
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AA seq
571 aa
AA seq
DB search
MTNFSNLGLSDPLLKVLTEMNFEEPTKIQQQAIPVLINESHRDFIGLAQTGTGKTAAFGL
PLLESIDPTYKGTQAVVLAPTRELGQQIGQQLESFSKYMKGVKIATVYGGASIQGQIRAL
KQSPQILIATPGRLLDLLNRKAVQLTGVRYVVLDEADEMLNMGFREDLDHILSYTEGEKA
TWLFSATMAKEIRDIVKKYMHDPNEVKIDSGNVVNKNIDHQYFAVKAKDKPSLLQYIIQL
EPDMRGIIFCRTKRDTQSISEQLQKRGLPVDALHGDMSQAQRDQVMKRFKNHTLEFLLAT
DVAARGIDVNDITHVIHYALPDDAEYYTHRSGRTGRAGKKGISLSLVSSSDQRKLKFLQK
KLNITFSEYTLPSPVAVENQKLVAWAKRITDVKPDYEAINSHQAEIYASFEHLTKEELID
KLLTIEIDSFGIREPSFDVADLDSVSLDGKGSSGGKYKRFFVNIGKIDGFGAPDLIDFIM
EYSGLNKKAIGNITMEDRRSYFEVEREEASGIEAAFKDLMLDDREIRVNAAEGRSGKKGK
GGDRRGGGHGGGKSRQRKGGGGGRGGRNRRR
NT seq
1716 nt
NT seq
+upstream
nt +downstream
nt
ttgacaaatttttctaatctgggactttcagatcctttactgaaagtgcttacagaaatg
aattttgaagagcccaccaaaattcagcagcaagccattcctgttttaatcaatgaatct
cacagagactttattggtttagctcaaaccggtactggtaaaacggcggcttttggtttg
ccactgttagagtctatagatcctacttataaaggtactcaggctgtggtattagctcct
acacgagagctgggtcagcaaattggtcagcagctagagtcgttttctaagtacatgaag
ggtgtgaagatagctaccgtttatggtggtgcatctattcaggggcaaatacgtgctttg
aagcagtctcctcagatacttatagctactcctggccgattactggatctgttaaacaga
aaggcagtacagcttaccggtgttcgctacgtagtgttagatgaagctgatgagatgctc
aacatgggctttagagaagacttggatcatatcctttcttataccgaaggcgagaaagct
acctggcttttttctgctactatggctaaagagatcagagacattgtaaaaaaatacatg
catgatcccaatgaggtaaagatagattcaggtaatgtggtgaataagaatattgatcac
caatactttgctgttaaagctaaagataaaccttctttacttcagtatattatacagtta
gagcccgatatgcgaggcattattttctgtagaacaaaaagagatacacaaagcataagc
gaacaacttcagaaacgtggtttgccagtagacgcactgcatggtgatatgtctcaggca
caaagagaccaggtaatgaagaggtttaagaatcatacattagagtttttgcttgctaca
gatgtggctgccagaggtattgatgttaatgatattacccacgtaattcattatgccttg
cctgatgatgccgaatattatactcacagaagtggtagaacaggtagagcaggtaaaaaa
gggatttctttgagtttagtaagtagttctgatcaaagaaagcttaagtttttacagaag
aagttaaatattactttttcagaatatactctgcctagtccggtagctgtagaaaatcaa
aaactagtggcttgggccaaaagaattaccgacgtaaaacctgattatgaagctattaat
agccatcaggccgagatttatgcatcttttgagcatttaaccaaagaagaactgattgac
aaactgcttaccattgaaatagatagttttggtataagagaaccttcttttgatgttgca
gatcttgattcagttagcttggatggtaaaggaagctcaggaggaaagtataagagattt
tttgttaacataggtaaaattgatggctttggagctcctgatctgatagactttataatg
gagtactcaggattgaataaaaaggctattggtaacataaccatggaagaccgacgctct
tactttgaagtagaaagagaagaagcttctggtattgaagcagcttttaaagatctgatg
cttgatgacagagagattcgtgtgaatgcagcagaaggccgatctggtaaaaaaggaaaa
ggaggagatcgtcgtggtggtggacacggaggtggcaaatcacgccaaagaaaaggcggc
ggtggcggcagaggtggccgtaacagaagaagataa
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