Fusobacterium mortiferum: C4N19_10560
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Entry
C4N19_10560 CDS
T05444
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
fmo
Fusobacterium mortiferum
Brite
KEGG Orthology (KO) [BR:
fmo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
fmo03016
]
C4N19_10560
Enzymes [BR:
fmo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
C4N19_10560
Transfer RNA biogenesis [BR:
fmo03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
C4N19_10560
Prokaryotic type
tRNA splicing ligases
C4N19_10560
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
RtcB
Podovirus_Gp16
MAT1
DUF3231
Glycos_trans_3N
Motif
Other DBs
NCBI-ProteinID:
AVQ20109
UniProt:
A0ABM6U092
LinkDB
All DBs
Position
complement(2111124..2112305)
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AA seq
393 aa
AA seq
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MYKIMSNNLTDYEAINQIEEINKIFNDNNIVIMPDYHAGKGCVVGTTMLITDKVCPNHVG
VDIGCGIAGYKIDKRYFKFDIEKLKELDDIIRKNIPSGLSINKRKSKFIPKGYEIKLRAK
VDRQAMDRAYLSLGTLGGGNHFIEVGENEECYILFVHSGSRNLGVQVANYHQNIAIDTCN
KERVEYIYNITKNVAPEEREKMIEEYKKENPHILNPSCYLEGVYLEDYLFDMRVMEEFAC
LNREIMIKTILEKLDIPFVKGNYIESTHNYIEEYKGLHILRKGATSAKKDERVIIPLNMR
DGIIIGIGKGNPEWNYSAPHGAGRILSRKKAKENLSLDEFKETMEGIFTTCVSNSTLDES
PMAYKPMEEILEVIGDTIEIEEIVKPIYNFKAN
NT seq
1182 nt
NT seq
+upstream
nt +downstream
nt
atgtataaaataatgtcgaataatttgactgattatgaagctataaatcagatagaagag
attaataagatatttaatgataataacatagtaattatgccagactatcatgctggaaaa
ggttgtgtagtaggaactactatgctgataactgataaagtttgtcctaaccatgtaggt
gtagatattggttgtggaatagctggttataaaatagataagagatattttaaatttgat
atagagaaattaaaagagttagatgatataataagaaaaaatattccaagtggtttatca
ataaacaaaagaaaatcaaagtttatacctaaaggttacgagataaaattaagagctaaa
gtagatagacaagctatggatagagcttatttaagtttaggaactcttggtggaggaaat
cattttatagaagtaggagaaaatgaagagtgttatattttatttgttcactctggaagt
agaaatttaggagttcaagtagcaaattatcatcaaaatatagcaatagatacttgtaac
aaagagagagtagagtatatttataatataactaaaaatgtagctccagaagagagagaa
aagatgatagaggaatataagaaagaaaatcctcatattctgaatccaagctgttattta
gaaggagtttatttagaagattatctctttgatatgagagtaatggaagagtttgcatgc
ctaaatagggagataatgataaaaactattttagaaaaattagatattccttttgttaaa
ggaaattatatagagagtactcataactatatagaggagtataaagggcttcatattttg
agaaaaggtgctacatcagctaaaaaagatgaaagagttataattcctttaaatatgaga
gatggaattatcataggaataggaaagggtaatccagagtggaattattcagctccacat
ggtgctggaaggattcttagtagaaaaaaggctaaggaaaatctgtctttagatgagttt
aaagaaactatggaaggaatatttactacttgtgtatctaatagtactttagatgaatct
cctatggcttacaaacctatggaagagattttagaggttattggagatactattgaaata
gaagagatagtaaaaccaatttataattttaaagctaattaa
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