KEGG   Fuerstiella marisgermanici: Fuma_03516
Entry
Fuma_03516        CDS       T04678                                 
Symbol
deaD
Name
(GenBank) Cold-shock DEAD box protein A
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
Organism
fmr  Fuerstiella marisgermanici
Pathway
fmr03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:fmr00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Fuma_03516 (deaD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:fmr03019]
    Fuma_03516 (deaD)
   03009 Ribosome biogenesis [BR:fmr03009]
    Fuma_03516 (deaD)
Enzymes [BR:fmr01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     Fuma_03516 (deaD)
Messenger RNA biogenesis [BR:fmr03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     Fuma_03516 (deaD)
Ribosome biogenesis [BR:fmr03009]
 Prokaryotic type
  rRNA helicases
   Fuma_03516 (deaD)
SSDB
Motif
Pfam: DEAD Helicase_C DbpA ResIII CMS1 Cas3-like_C_2 P-loop_SecA
Other DBs
NCBI-ProteinID: APZ93898
UniProt: A0A1P8WIM0
LinkDB
Position
complement(4721716..4724577)
AA seq 953 aa
MSDQNTNQASGFDVFQTFQTFEMPTTSIVFEPEALSQPETVKQPEESRQEVAEAPADEPL
IVDDIVEGEPAGLVEESTPEPVAEEAAAEEPAAEEPVAEVPVVEELAAEKSPAEEVPVEV
EEVASEQRVVAELNVEEPVVEVEPEEFVAIERAELPVEAVEAAVEPVGPTVAESTVPEPA
PEAQVVAQQNAAPPTVVKVHNGAVTVQRRPEDNPVQPASAVAEAVTPASDESQTVEIEAS
TESAKVEVRQSEPVVEAASQPVEVVAQAPDPQATPVSEPSAETTTPQTPKSAVATNPAPQ
PVVASAMASETPRAYGKADNEVNNQGAAMRQASEVNSGQPKSASTDQKPRVPGEVTFRDL
PLHEDVQRAIEQSGYEKPTDIQAQIIPHVLEGRDVLAQSQTGTGKTAAFALPVLSNIDTG
PRQPPQVLVLAPTRELAIQVAKSFSTYASCMPRFGVAAIYGGQDYGIQLRALRDGVQVVV
GTPGRVIDHIKRGTLDLSNIKCLVLDEADEMLNMGFLEDVQFVLDQTPAGRQVALFSATL
PPPIRTIAQRYLSDPTRITIKKKTMTADSIRQRALFVPPRDKVETLIRILEVEETDGVIV
FTKTREATVSVAEQLSKAGLNAIALNGDMAQRVRERTIDQLKSGHLDILVATDVAARGLD
VNRISHVFNYDMPQDTESYIHRVGRTGRAGRKGEAVIFLTNNQRGKLRMIERATKQPIEV
VQPPTADEINAKRIERFTQQITDVTAEADLTIFKDMISKYAEESGKPLEMIAAALAHIAQ
QGRPFFMKDRPARKRNERDDRGGRERFERGNERSGGRSQFSDRPSRPSGGGRQLGPPEPG
MDRYRIEVGWQDGVKPGNIVGAVANEGGIDGDNIGPISIHDEFSTIDLPTGMPRDVFQTL
QQTRVAGKQLRLSASRGEQSSPPRRNQGYQGGKPGGFRGKSSGNFSKGRKFRK
NT seq 2862 nt   +upstreamnt  +downstreamnt
atgtcggatcagaacaccaatcaagcgtcaggttttgatgtattccagacgtttcaaacg
tttgaaatgccaactacatccatcgtcttcgaacccgaagcgctgtcccagccggaaaca
gtcaagcaaccggaagaatctcgtcaggaagtcgctgaggcacctgctgatgagccgcta
atcgtcgacgatatcgtcgagggcgaaccagccggtttggttgaggaatcaactccggaa
ccggttgctgaggaagcagcggccgaggagccagccgccgaggaaccagttgctgaagta
ccagttgtcgaggaactggcagccgagaaatcgcctgctgaagaagtgcctgttgaagtt
gaagaagtggccagcgagcaacgcgtcgttgcggaattgaatgtcgaagaaccggttgtt
gaagttgagccggaagaattcgttgctattgagcgagcggaattgccggtcgaagcagtc
gaagctgcagtagagcccgttggaccgacggttgctgagtctacggtgcctgagcctgct
cctgaggcacaagttgtcgcgcagcaaaacgcggcaccgccaactgtcgtgaaagtgcac
aacggcgcagtgaccgtccaacggcggcccgaagacaatcccgtgcagcctgcatcagca
gttgccgaagcagtgacgccagcttcagacgaaagtcagaccgtcgaaatcgaagcgtcc
acagagtctgcaaaagtcgaagtgcggcaatcggaacctgtcgttgaagccgcttcccag
cctgttgaagtggttgctcaggccccggacccccaagccacgcctgttagtgaaccgtct
gcagagacgacaacgccacagacacctaagtctgccgtcgctaccaatcctgcaccgcag
ccggtcgtcgccagtgcgatggcgtcggaaacgccacgtgcctacgggaaagcagacaac
gaagtgaacaaccagggcgcggcaatgcggcaagcttctgaggttaattcgggacagccg
aagtctgcctcgacggaccaaaagccccgcgtgccgggcgaagttaccttccgcgacctg
ccgcttcacgaagatgtgcagcgagcgatcgaacagtccggctacgaaaagcccactgat
attcaggctcagatcattccgcacgtgctggaaggtcgcgacgtgttggctcagtcgcaa
accggaaccggtaaaacggctgcgttcgctctgccagttttgtcaaacattgacaccggt
cctcgtcagccacctcaggtgttggtgttggctccgactcgagaacttgccattcaggtg
gcgaaatcattttcgacttacgccagttgcatgcctcgcttcggagtcgccgcgatctac
ggcggccaggactacggcattcagcttcgcgccctgcgagacggcgtgcaggtcgtggtg
ggcacacctggtcgagtgatcgatcacatcaaacgcggcacgctggacttgagcaacatc
aaatgccttgtgttggacgaagccgacgagatgctgaacatgggctttctcgaagacgtg
cagttcgtcctcgaccaaacacccgccggccgccaggttgctctgtttagtgcgacactg
ccgccaccgattcgcacgattgctcaacgctacctgagcgatccaactcgcatcacgatc
aaaaagaaaacgatgaccgccgattcgattcggcagcgagctctgtttgttcctcctcgc
gacaaagttgaaacgttgatccgaattttggaggttgaagaaaccgacggtgtgatcgtg
tttacgaagacacgcgaagccactgtctctgtggccgaacagctgtccaaggcgggactc
aatgccatcgcgttgaatggtgacatggctcaacgagttcgcgaacgtacgatcgatcag
ttgaagtcggggcatctggacattctggttgcgactgacgtcgctgctcgtgggttggac
gtgaatcgcatcagccacgtcttcaactacgacatgccgcaggacactgagtcgtacatt
caccgagttggccgaacaggccgagcgggccgcaaaggcgaagcggtcatctttttgacg
aacaatcaacgcggcaagctgcggatgattgaacgagcgaccaagcagccaatcgaagtt
gttcagccgccgaccgcagacgaaatcaatgccaagcgaatcgaacggttcactcagcag
attacagacgtcacggctgaagcggacctcacgattttcaaagacatgatcagcaagtac
gctgaagaatccggcaaaccgctggaaatgatcgcggccgcgttggctcatatcgcccag
cagggacgtccgttctttatgaaagaccggccggctcgcaaacgcaacgagcgggatgac
cgtggcggacgtgagcgattcgaacgcggcaatgagcgaagtggaggtcgcagccagttc
tccgatcgtccgtcgcgaccgagtggtggtggccgtcaactggggccaccggaaccaggc
atggatcgatatcgtattgaagtcggctggcaggacggcgtgaagccgggcaacattgtc
ggtgccgtggccaacgaaggtggtatcgacggcgacaacatcggtccgatcagtattcat
gacgaattcagcacgatcgatcttccgaccggcatgccacgcgacgtcttccagactttg
cagcagacacgcgttgccggcaagcagcttcgacttagtgcttcacgcggtgaacagagt
tcgccacctcgccgaaaccagggctaccagggcggcaagcccggcggttttcgaggcaaa
agcagcggcaacttttcgaagggccgcaagttccggaaatag

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