Fuerstiella marisgermanici: Fuma_05960
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Entry
Fuma_05960 CDS
T04678
Symbol
mfd_2
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
fmr
Fuerstiella marisgermanici
Pathway
fmr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
fmr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Fuma_05960 (mfd_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fmr03400
]
Fuma_05960 (mfd_2)
Enzymes [BR:
fmr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Fuma_05960 (mfd_2)
DNA repair and recombination proteins [BR:
fmr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Fuma_05960 (mfd_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
Helicase_C
TRCF
CarD_TRCF_RID
ResIII
Cas3-like_C_2
MFD_D3
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
APZ96292
UniProt:
A0A1P8WQG3
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All DBs
Position
7918437..7921943
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AA seq
1168 aa
AA seq
DB search
MTRDSQQVPTSLAELTALIKAAPGFADVLKALESGQSGAIDGAWGSSCALSVAALARAAP
ASTWLVVVPSVRDIDDFYDQLAEFLPSDAETKQFPAWETLPDEHDVTDSVFAARLGAVRF
LNETGGQKEESRSDAAAADQQSAVAADPWHFSADTSEPLPGASEVELAKEPTPPNSQRKS
ANAGPALIVTCLPALLQPVPARADIEGATRRIKVGDELSLEPLLDWLIERSFDRVTAVEL
PGEFSVHGGILDIYPPTEPDPIRIELFGDEVESIRSFDVETQRRLNDLDEVAVVAPKPVK
PPDKPSPGDSLRPHTAIATATESLLDSLPKDTVVVLSDMAQAISEGKMYLQRLSNPIGMF
SVDATMARLTDFPSVTIDGLGADSYETSCHLKIEAVERFASTGRDALPDLAESLGPNDRV
LLSCHNEGEKERLVELIAETDASEGLTLSERISLCVGRVSNGFRFVERGLMVISDNELFS
RSQARKVKSRRKSADTRAIDTFLDLKDGDLVVHVSQGIAKYRGMALMDNEGEKEEHLLLE
FRDSLIVYVPASLIHLVQKYIGPAKSMPELSKFGGTAWEKKKGKVAEAVIDMASDMLKLQ
AERNSKPGLQCQPDSHMQQEFEQAFPFTPTVDQVTAISDFKEDMQRIRPMDRLICGDVGF
GKTEVAMRAVFKAVDNGRQVAVLVPTTVLAEQHFRTFSERMAEFPVSVEMLSRFRSAGEQ
KKIIEKLGKGEIDIVIGTHRLVSKDVKFRDLGLLVIDEEQKFGVKVKDRLKHLRLEVDIL
TLTATPIPRTLHMSLLGIRDISSLTTPPRDRMPIETRVGRFDESLIRSSIIRELNRGGQV
YFVHNRVHDIQRIADLLRQIVPEATLTIAHGQMTPDELEIAMLDFVAGKADILLATTIIE
SGLDIPNANTMIIHQADIYGLADLHQLRGRVGRDRHRAYCYLMLEEGKVVTTKATRRLKA
IEEYSELGAGFRIAMRDLEIRGAGNILGTEQSGNIAAVGYELYCQLLENSVRTLKKQPLR
YQTHVKIELPVSAFIPDRYISEQKLKIEVYRRLSQANSLQQLAELEEELRDRFGPVPTPA
KRMIRLRELNLRALAWKIENVRLEDGYAVFRYRDVKMIKVLSYLHKGHLRVVDQHDAYWP
LEAREEDGTAVMEELIKALSEAEPPVPE
NT seq
3507 nt
NT seq
+upstream
nt +downstream
nt
atgacacgtgattcccagcaggtcccaacctcgcttgctgaactgactgcgttaattaaa
gctgcaccggggtttgccgacgtccttaaggcactcgaatccggccaaagcggcgcgatt
gatggagcttggggttcgtcatgcgcgctaagtgtggctgctttggcccgggcggctccg
gcaagcacctggctggtggtggtgcccagcgttcgcgacatcgacgacttctacgatcag
ttggcggaattcctgccgtcggacgcagaaaccaagcagtttcctgcctgggaaacgctg
cccgatgaacacgacgtgaccgacagcgtgtttgccgcgaggctgggagcggtgcggttc
ctgaatgaaactggagggcagaaagaggaaagccgaagcgatgcggcagccgcagaccag
cagtcggctgtggccgctgatccgtggcatttttcggcggacaccagcgagccgctgcct
ggtgcgtccgaagtggagctcgccaaagagccgacgccgccgaactctcagaggaaatcc
gcgaatgcaggtcccgcgctaatcgtgacgtgtctgcccgcactgctgcagcccgtcccc
gctcgcgctgacattgagggagcgacgcgtcggatcaaggtcggcgacgaattatccctg
gaaccgctcctcgactggctgatcgaacgcagcttcgaccgtgtaactgccgtcgaattg
ccgggggagttctctgttcatggcggcatcctggatatctatccgccgaccgaacctgat
cccattcgtatcgaactgtttggtgacgaagtcgaatcgattcgtagcttcgacgtggaa
actcagcgacgactaaacgatttggacgaagtcgccgttgtcgctcccaagccggtgaag
ccccccgacaagccttcgccaggcgacagccttcgtcctcatacagcgatcgcaaccgcc
accgaatcgctgctcgattcgctgccgaaggacacggtcgtggttctcagcgacatggct
caggcgatcagtgaaggcaagatgtatctgcagcggctgtccaatccgataggtatgttc
agcgtcgacgccacgatggcgcgactgacagattttccttctgtcacgattgatggtctg
ggagccgacagttacgagacgtcgtgtcatctgaaaattgaagccgtcgaacgcttcgcc
agcacggggcgcgacgccctgcccgacctcgccgaatcactcgggccaaacgatcgagtt
ctgttgtcgtgccacaacgaaggcgaaaaagaacgactggtcgaactgatcgcggaaacg
gatgcgtcggaaggcctgactctcagcgaacgcatctcgctgtgcgttggccgagtctca
aacggcttccgctttgtcgaacgtggcctgatggtcatcagcgacaacgaactgttttcg
cgatcgcaggcacgcaaggtcaagtcacggcgcaaatccgctgacactcgcgcgatcgat
acgtttttggatctgaaggacggtgatcttgtcgttcacgtcagccaggggatcgcgaag
tatcgcggcatggctttgatggacaacgaaggggaaaaggaagagcacctgctgttggaa
tttcgcgacagcctgatcgtgtacgtgccggcgtcgctgattcatctggtgcaaaaatat
atcggcccggccaagtcgatgcccgaactgtcaaagtttggcggcacggcgtgggaaaag
aagaagggcaaagttgccgaagccgtcatcgacatggcgtccgacatgttgaaacttcag
gccgaacgcaattcgaagccgggcctgcagtgccagccggattcgcacatgcagcaggaa
ttcgagcaggcgtttccgttcacgccaacagtcgatcaggtgaccgcaatttcggacttc
aaagaggacatgcagcgcatccgtccgatggaccgtctgatctgcggcgacgttggtttc
ggtaaaactgaagtcgccatgcgagccgtctttaaagcggtcgacaatggacgtcaggtg
gccgtgttggtgcccacaaccgtgctggccgaacagcacttccgcacgttcagcgaacgc
atggccgaattcccggtcagcgttgaaatgctgtcgcggtttcggtcggcgggcgaacag
aaaaagattatcgagaagcttggtaagggcgaaatcgatatcgtcattggcacgcatcgc
ctggtatcgaaggacgtgaagttccgtgatctcggactgctggtcatcgatgaagaacag
aaatttggcgtgaaggttaaggaccgcctgaagcatctgcggctggaagtcgacattctg
acgctgactgccacgccgattccacgaacgctgcacatgtcgctgttgggtatccgcgac
atcagcagcctcacgacaccgccccgcgatcgtatgccgattgaaacgcgagttggccgg
tttgacgaatcgctgattcgcagttcgatcattcgggaactgaaccgaggcgggcaggtt
tacttcgttcacaatcgagttcacgacattcaacggattgctgatctcctgcggcagatc
gtcccggaagcaacactcacgattgcccacggccaaatgacgccggacgaattggagatc
gcgatgctggacttcgtggctggcaaggcggacattcttctggccacgacgatcatcgaa
agtggtctggacattcccaatgccaacaccatgatcattcatcaggcggacatctacggt
ctggcggacctgcatcagttgcgtggtcgagtcggccgcgatcggcatcgagcgtactgc
tacctgatgctggaagagggcaaggtcgtcaccaccaaagcgactcgccgcctgaaagcg
atcgaagaatacagcgaactgggtgccggattccgcatcgctatgcgagaccttgaaatc
cgcggtgcaggtaacattctcggcaccgaacaaagcggaaatatcgcggcggtcggctac
gaattatattgtcagcttcttgagaattccgttcgcacactcaaaaaacaaccgctgcga
tatcaaactcatgtgaagatcgaacttcctgtctcggcctttattccggatcgttacatt
tcagaacagaagttgaagatcgaagtttatcgccgactctcccaggcgaattctctgcaa
caactggctgaactggaagaagaacttcgcgaccgctttggccccgttcccacacccgcc
aaacgcatgattcggttgcgggaactgaacctgagagccctcgcctggaagatcgagaac
gttcgcctggaggatgggtacgccgtgtttcggtatcgtgatgtgaaaatgattaaggtg
cttagctatctgcataaaggccacttacgagttgtcgatcaacacgacgcctactggcca
ctggaggctcgagaagaagacggcaccgccgtcatggaagaactgatcaaagccctgtcc
gaagccgaaccaccagtgcccgaatag
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