Fenollaria massiliensis: M1R53_04565
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Entry
M1R53_04565 CDS
T08130
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
fms
Fenollaria massiliensis
Pathway
fms03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
fms00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
M1R53_04565 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fms03400
]
M1R53_04565 (mfd)
Enzymes [BR:
fms01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
M1R53_04565 (mfd)
DNA repair and recombination proteins [BR:
fms03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
M1R53_04565 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
DUF924
RecG_dom3_C
UB2H
AAA_22
FCaBP_EF-hand
MFD_D3
Imm10
Por_Secre_tail
Motif
Other DBs
NCBI-ProteinID:
UQK58516
UniProt:
A0A9E7DIG5
LinkDB
All DBs
Position
complement(890853..894329)
Genome browser
AA seq
1158 aa
AA seq
DB search
MDILQKGLLAFQYKDIVKDVKNALNPIFINGLVEEAIGISVKTIQDETNTSSIIITYDEA
RARRIYEDLKNSHANVYYLKKREMLFYNVSDSSLETEYSRIQTLMSVLKDKNSILIMDVK
TLDEELISQDIYKSLSFSLKTSQVVNINELTSSLTELGYKRASIASNKGEFALRGSIVDI
FDSISDMPFRIEFFSDEIDSIRIFDKDTQKTIATTEEITINPAREILILDKYKKNIIDNL
KKDFDKTKEANKSSYSLMNEKFKEYFEMLKEDSFDKNRSLLLRYIPDKFKCSIFDYFDEN
TYIYLDESKRLEEEYDKYINFHSQEMESLYKNGEILLKEFNAIMSYGDVLNRIKKNNLVL
LSNILLNTKDFNPKAIYNLHLNSVTKYNSKYEALLDDLRHYKLRGYKILLSIKDIERYDR
VYSLLKDNDIAFIQEDEIDDKILSNQLLLRNDSSTRGFVFSENKFIVLSENDIYGSQKEK
IRKKKSSKKLDISDISEGTYIVHEDHGVGIYKGIVKLEVLGVKKDFLYIQYKGEDKLYVP
IAQMDRIQKFSDKDSKDVKINKLSTNDWIKQKSKSKKAIEKMAEDLVELYAIRKEKEGYA
FSKDTAWQRDFEESFPYEETKGQLEAIIDIKRDMESNKPMDRLLCGDVGFGKTEVALRAA
FKAIMDGKQVAFLCPTTILCQQHYETIIERFNKYPIRSAMMSRFRTSKEQKQTAEELKTH
SIDIVVGTHRLLSDDVRFKDLGLLIIDEEQRFGVRDKEKIKKLKENVDVLSLSATPIPRT
MHMALSGIRSMSVIEEAPQDRYPIQTYVLEYNKSLVRDAILKEMDRDGQVFFVFNNVENI
EKMYNELQNLVPEARIAIGHGQMTESKLEKVMMDFMYHKYDVLLSTTIIETGLDIPNANT
IIVYNSENMGLSQLYQLRGRVGRMNRIAYGYFTYKENKVLTETQEERLKAIKEFTELGSG
YKIAMRDLQIRGAGNLLGTSQHGHIAAIGYDLYIKYLNLAIKKLRGYEVKEDIDTRVDIT
VDAYIPDDFAPDEYIKMDLYKKIAAVENEEMKSELIDEIVDRFADIPKSIVNLIDISEIR
SMAKEFSITSINEVGGDFRIEFLNDKVINPQWIADIYKKYKNRLYINKRYMNVIRISIEG
ENKIKLIKDILILFKMSK
NT seq
3477 nt
NT seq
+upstream
nt +downstream
nt
atggatattttacaaaaaggcttattagcttttcaatacaaagatatagttaaggacgtt
aaaaatgctttaaatcctatatttatcaatggtcttgtagaagaagctataggcattagc
gttaaaactatccaagatgaaacaaatactagctcaatcatcatcacatatgatgaagca
agagcaagaagaatttatgaggatttaaaaaattctcatgccaatgtatattatttaaaa
aagagagagatgcttttttataatgttagcgactcctctttagaaactgaatattcaagg
atacagacgcttatgtctgtacttaaggacaaaaactctatcttgataatggatgtaaaa
actcttgatgaagagcttatcagccaagatatctataagagtctaagttttagcttaaag
actagtcaagtcgttaatattaatgaattaaccagttctttaacagagcttggatacaaa
agagcaagcatcgcctctaataaaggtgagtttgctcttagaggctctattgtggatata
tttgactcgatttctgatatgccatttaggatagagtttttttctgatgaaattgattct
ataagaatatttgataaagacacacagaaaactattgcaacgactgaagaaattacaatt
aatccggcgagagaaattttaattcttgataaatacaaaaaaaatattattgataattta
aaaaaagattttgacaagacaaaagaagctaacaaaagctcatactcacttatgaatgag
aagtttaaagaatattttgagatgcttaaagaagatagttttgataagaacagatctcta
ctattaagatatattcctgataaatttaagtgcagcatctttgattattttgatgaaaat
acttatatttatttagatgagagtaaaagacttgaagaagagtatgataagtacataaat
tttcactctcaagagatggagtccttatataaaaatggcgagatacttctaaaagagttt
aacgccatcatgtcatatggtgacgttcttaataggattaaaaagaataatttagtttta
ctgtcaaatattttattaaatacaaaagattttaatccaaaagcaatttacaatttacat
ttaaattctgtaacaaaatataattctaagtatgaagcgcttcttgatgatttaaggcac
tataagcttagaggctataagatacttttgtctataaaagacattgaaagatacgacaga
gtttattctcttttaaaagataatgatattgcttttatacaagaggatgagatagatgac
aagattttatcaaatcaactcttattaagaaatgattcatctactagaggttttgttttt
agtgaaaataaatttatagttttatctgaaaatgatatttatggctcacaaaaagaaaag
attagaaagaaaaaatcttccaagaagcttgatatttcagatatatctgaaggaacatat
atagttcacgaagatcacggcgtaggtatatataagggcatagttaagctagaagtgctt
ggcgtaaaaaaagacttcttatatatacagtataagggcgaggacaaactttatgtacca
atcgctcagatggataggatacagaagttttctgataaagatagcaaagacgttaagata
aataaattatcgacaaatgactggatcaagcaaaaatcaaaatcaaagaaggctattgaa
aagatggcggaagatttagttgagctatatgcaataagaaaagaaaaagagggctatgcc
ttttcaaaagatactgcttggcaaagagactttgaagagtctttcccatatgaagagacg
aagggacagctcgaagcaattattgacataaagagagatatggagtcaaataaaccgatg
gataggcttttatgcggggacgttggttttggcaaaaccgaagtagcccttagagcagcg
ttcaaagccatcatggatggtaagcaagttgctttcttatgcccaacaactatactttgt
cagcagcattatgagacaattattgagagatttaataaatatccaatccgttcagctatg
atgtctcgctttagaacaagtaaagagcaaaagcaaacagccgaagaacttaaaactcat
agcatagacatagtcgttggaacgcatagattattatcagatgatgttagatttaaagat
ttaggcttattaatcatagacgaagaacaaagatttggtgttagagataaagaaaaaatt
aaaaaacttaaggaaaatgttgacgttttatcactttcagctacaccaatacctagaacc
atgcatatggctttgtcaggcataagaagtatgtctgttatagaggaagcgcctcaagat
agatatcctatacaaacctatgtattggagtataataagagtctagttagagatgcgata
cttaaagagatggatagagatggtcaagtgttttttgtctttaataatgttgagaacatt
gaaaaaatgtataatgaattacaaaatttagttcctgaagcaagaattgccatcggtcac
ggacaaatgactgagtcaaaacttgaaaaagttatgatggattttatgtatcataaatat
gacgttttgctatcgacaaccataatcgagacaggtctagacataccaaacgcaaataca
attattgtttataactcagaaaatatgggcctaagccagctttaccagttaagaggaaga
gtaggcagaatgaatagaattgcttacggctatttcacttataaagaaaataaagttctt
actgaaacacaagaagagagattaaaggcaataaaagagtttactgagcttggaagtgga
tataaaattgctatgcgtgatttgcaaattagaggcgcaggtaatttattaggaacgtct
caacacggccacatcgctgcgattggttatgatttatatattaaatatttaaatcttgct
ataaagaagcttagaggatatgaggttaaagaagatattgacacaagagtcgacatcacc
gttgatgcttatataccagatgattttgctcctgacgaatacattaagatggatctatat
aaaaagatagctgcagttgaaaacgaagagatgaagagcgagcttatagatgaaatcgtt
gacagatttgccgatatacctaaatcaatagttaatctaatcgatataagcgagattaga
tccatggcaaaagaattttcaataacatcaattaatgaggtcggtggagatttcaggata
gaatttttaaacgataaagttatcaatcctcaatggatagctgatatatataagaaatat
aagaacagactttatataaacaagagatatatgaacgttataagaatatctatagagggc
gaaaacaagataaaactcataaaagatatattaattttatttaaaatgagtaaatag
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