Fenollaria massiliensis: M1R53_06535
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Entry
M1R53_06535 CDS
T08130
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
fms
Fenollaria massiliensis
Pathway
fms03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
fms00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
M1R53_06535 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fms03021
]
M1R53_06535 (rpoC)
03400 DNA repair and recombination proteins [BR:
fms03400
]
M1R53_06535 (rpoC)
Enzymes [BR:
fms01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
M1R53_06535 (rpoC)
Transcription machinery [BR:
fms03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
M1R53_06535 (rpoC)
DNA repair and recombination proteins [BR:
fms03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
M1R53_06535 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
UQK58891
UniProt:
A0A9E7DJ87
LinkDB
All DBs
Position
complement(1334297..1338016)
Genome browser
AA seq
1239 aa
AA seq
DB search
MFELNKFNSIQIGLASSQDIREWSKGEVKKPETINYRTLKPEAEGLFCEKIFGPVKDWTC
HCGKYNKIRYKGMICDKCGVEITRAKVRRERMGHIELASPCTHIWYLKGTPSRIAIVLDV
SPKELEHVVYFASYIVMDPGKTGLKYKQILNEQEYSEAIEMFGYGSFDARMGAEAVLELL
KAIDLDKEAEELTEELEGASTQKKIKVLRKLETIESFRQSGNRPEWMVIEALPVIPPDLR
PMVQLDGGRFATSDLNDLYRRVINRNNRLRRLLELSAPEIITRNEKRMLQEAVDALIDNG
RRGRAVTGPGNRPLKSLSDMIKGKQGRFRQNLLGKRVDYSGRSVIVVGPKLKFYQCGLPK
MMALELFKPFVMRRLVETGKAHNIKSAKRMVERAKSDIWDVLEYVIKDHPVLLNRAPTLH
RLGIQAFEPVLVEGKAIKLHPLVCSAYNADFDGDQMAVHLPLSIEAQAEARLLMLSINNI
LAPKDGKPISIPSQDMVLGCYYMTLDIEGSKGSGHVFQDYDEMIKAYQLGLIDLHAKVKV
RVKLNEEDRGKLVESTVGRFILNKKIPQDLGFVNREEDPYSLEIDRVVSKKTLGTILDKC
YQKHGNIVTSKLLDHIKSTGYKHSTLSAVSISMADVVVPKEKTALIEKAQKEVEKYEKAY
RDGFMTEEERYEGVINIWNGITDEVTDALMKSLDPLNNIFIMADSGARGSKNQIRQLGGM
RGLMASSTGKTVEIPIKSNFREGLSVLEFFLSSHGSRKGLSDIALKTADSGYLTRRLVDV
SQDVIVTEDDCHTDEGHTVRTIRDGKEILEELEERLIGRYAFEDVINPKDGSIIVKKDEL
IDEDTAHFIQEIGIEEVKVRSVLTCQTKHGVCAKCYGRNLATGNNVNIGESVGIIAAQSI
GEPGTQLTMRNFHSGGVANADDITQGLPRVEELFEARKPKGQAQIAQISGIVSINEDDPQ
QRIVVITDDKEGTAVEHPVNYAARLKVHEGDYIEKGKEITEGNASPQEIMKVLGVEGVED
YIIKEVQRVYRMTGIDINDKHIEIICKQMLKKVRIEAQNDSSFLPGALVNIYDFIHENRK
LKEEGKVPAEGKRVLLGISKSSLATDSFLSAASFQETTRVLTEAAIRGKKDELVGLKENV
IIGKIIPAGTGMLKYRNIKVKEDETVLKKQMEEELKRKRREIDDTNLFKDFDEDEKDKKK
SKDEEEIEESVDTSDSIELDKIIKNLLNEEKDKNSSKDN
NT seq
3720 nt
NT seq
+upstream
nt +downstream
nt
ttgttcgaattaaataaatttaacagtattcaaataggccttgcatcaagccaagacatc
agagagtggtctaagggagaagttaaaaaaccagaaacaataaattacagaacattaaag
ccagaagcagaaggcttgttctgtgaaaagatatttggacctgtaaaagactggacttgt
cactgcggtaaatacaacaagattagatataaaggcatgatatgcgataagtgcggcgtt
gaaattacaagagctaaggtaagacgtgagaggatgggccatattgaactagcaagccca
tgtacacatatttggtaccttaaaggaacaccttcaaggatagccatagtacttgacgtt
tcaccaaaagagcttgagcacgttgtatattttgcttcatatatagttatggatccaggc
aaaactggcttaaaatataaacaaatcttaaatgaacaagaatattcagaagctatagaa
atgtttggctatggttcatttgatgcaaggatgggcgcagaagcggttcttgaacttctt
aaggccatagacctagataaagaagcagaagaattaacagaagagctagaaggcgcatca
acacaaaagaagattaaagttttaagaaagcttgaaactatcgaatcattcagacaatca
ggcaatagacctgagtggatggttatagaagcacttccagttataccaccagatttaaga
cctatggttcaactagatggcggtagatttgctacaagcgatttaaacgatttatataga
agagttatcaacagaaacaacagacttagaagacttcttgagctatcagcaccagaaatc
atcacaagaaacgaaaagagaatgcttcaagaagctgttgacgcactaatcgataacggt
agacgcggaagagcggtaactggtcctggcaacagaccacttaagtctctatccgatatg
ataaagggtaaacaaggtagatttagacaaaacctactaggcaagagagttgactactca
ggtagatctgtaattgttgtaggaccaaaactaaagttctaccaatgcggtcttcctaag
atgatggcactagaactatttaagccatttgttatgagaagacttgttgaaacaggcaag
gctcataacatcaagagcgctaagagaatggtcgaaagagctaagtcagatatttgggac
gtacttgaatacgttatcaaagatcatccagtgctattaaacagagcaccgactcttcac
agacttggtattcaagcatttgaaccagttttagttgaaggtaaggcaataaaattacat
ccactagtatgttcagcatataacgccgacttcgacggtgaccaaatggctgtccaccta
ccattatcaatcgaagcacaagctgaagcaagacttttaatgctttcaattaacaatata
ttagcaccaaaagatggtaaaccaatttcaataccatcacaagacatggtactaggatgc
tattacatgacacttgacatagaaggaagcaaaggctcaggccacgttttccaagactat
gacgagatgataaaagcttatcaattaggactaatagatttacacgcaaaagttaaggtt
agagtaaaacttaatgaagaagatagaggtaaacttgttgaatcaacagttggtagattc
attcttaataagaagatacctcaagaccttggctttgtaaatagagaagaagatccatat
tcacttgaaatagacagagttgtttcaaagaaaactttaggaactatacttgataagtgc
tatcaaaagcacggtaacatcgttactagcaagcttttagaccatatcaaatcaactggt
tataagcactcaacactttcagcagtatctatatccatggcggacgttgtagttcctaag
gaaaagactgctctaattgaaaaggctcaaaaagaagttgaaaaatacgaaaaggcttat
agagacggttttatgaccgaagaagaaagatacgaaggcgttatcaatatttggaatgga
atcactgatgaagttactgatgcacttatgaaatcactagacccactaaacaatatcttc
atcatggcagactctggagccagaggtagtaagaaccaaatccgtcaattaggcggtatg
cgtggtctgatggcatcatcaactggtaagacagtagaaatccctatcaagtcaaacttt
agagagggactatcagtactagagttcttcctatcatcacacggttctagaaagggtcta
tcagatatcgccttaaagacagcagactctggttatctaacaagaagattagttgacgta
tcacaagacgttatagttactgaagacgattgccatactgatgaaggacacacagttaga
actataagagatggcaaagaaattcttgaagagctagaagaaagacttatcggtagatac
gcttttgaagatgtaataaaccctaaggacggttcaatcatagttaagaaagacgagctt
attgatgaagatacagctcacttcatacaagaaattggcatagaagaagttaaggtaaga
agcgttcttacttgtcaaactaagcacggcgtttgcgctaagtgctatggtagaaacctt
gctacaggaaacaatgttaatattggcgaatcagttggtatcatcgccgctcaatcaata
ggtgagccaggtacacagcttacaatgagaaacttccactcaggtggggttgccaacgca
gacgacatcactcaaggtcttccaagagttgaagaacttttcgaagctagaaaaccaaaa
ggacaagcacaaatcgctcaaatttcaggtattgtatcaataaacgaagacgatccacaa
caaagaatcgttgttataacagatgacaaagaaggtacagcagtagagcatcctgttaat
tatgcggcaagacttaaagttcacgaaggcgactacatcgaaaaaggtaaagaaatcaca
gaaggtaacgcatcacctcaagaaattatgaaagttcttggcgtagagggcgttgaagac
tatataataaaagaagttcaaagagtatatagaatgacaggtatcgatatcaatgacaaa
cacattgaaatcatctgtaaacaaatgcttaagaaagttaggatagaagcacaaaatgat
tcttcattcttaccaggagcacttgtaaatatatatgacttcatccatgaaaacagaaaa
cttaaagaagaaggcaaagtaccagcagaaggtaagagagtactacttggtatatccaag
tcatcattagcaacagattcattcttatcagcagcttcattccaagaaacaacaagagtt
ttaacagaagcagctatcagaggcaagaaagacgagctagtaggacttaaggaaaacgtt
atcataggtaagatcataccagcgggtacaggtatgcttaagtatagaaacatcaaagtt
aaagaagacgaaacagttttgaaaaaacaaatggaagaagaacttaagagaaagagaaga
gagatagacgatactaaccttttcaaagactttgatgaagacgaaaaagacaaaaagaaa
tcaaaggatgaagaagaaattgaagagagcgtagatacttctgattcaatcgaactagat
aaaattataaaaaatttattaaacgaagaaaaagataaaaattcttctaaggataattaa
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