Fructilactobacillus myrtifloralis: M3M35_02230
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Entry
M3M35_02230 CDS
T08864
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
fmt
Fructilactobacillus myrtifloralis
Pathway
fmt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fmt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
M3M35_02230
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fmt03019
]
M3M35_02230
Messenger RNA biogenesis [BR:
fmt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
M3M35_02230
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GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
USS85504
UniProt:
A0ABY5BPV4
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Position
434351..436036
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AA seq
561 aa
AA seq
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MSKLNVKNNETAIYGVGGLGEIGKNTYGVQFQDEIILIDAGIKFPESSQLGIDYVIPDYQ
YLVENQDKIKALVITHGHEDHIGGIPFILKAINVPVYAGPLALALIKGKLEEHGMLKQTE
LHAIDENTVLKFKKTSVSFFRTTHSIPDALGVAVHTPDGVIVETGDYKFDLTPVTNTPPD
LQTMAKLGEEGVLCLMADSTNAEKPVWTKSERYVSDSVRKIFKRVKGRIIFATFASNLSR
VMTAIDAAYQNGRKIAVFGRSMEAAVVNGRELGYIKVPDKAFVDANQLKSLPADKVMILC
TGSQGEQMAALSRIANGTHRQISIEPGDTVVLSSNPIPGNVLSVNRVVDELEEAGATVIK
GYANHIHTSGHGGQEEEKLMIRLMKPKFFVPIHGEYRMQKIHMGLAEQCGIPKDHCFILK
NGDVLALTKDSARMAGNFAAGDVYIDGNGVDTVTEQVIEDRQLLSEEGLVVVVATINLKD
KEIQSGPDLLSRGFVYMRESGELLDQGRKLVFRTIRRAMNNKNASEKTIKKAVVNELSNF
LYEKTERHPLVLPMLIMNNTK
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaactaaacgtcaaaaacaacgaaacggcgatttatggcgttggtggtctaggt
gaaatcggaaaaaacacgtatggcgtgcaattccaagacgaaatcattctcattgatgcc
ggaattaagtttccggaaagcagccaactcgggattgattacgtgattccagattatcaa
tatctggtcgaaaaccaggataagattaaggccctggtcattacccacggtcacgaagac
catatcggtgggattccctttatcctcaaggctattaacgttccggtgtacgccggtccc
ctcgccctcgctttaattaaaggtaaattagaagagcatggcatgttaaaacaaaccgag
ttacatgccatcgatgaaaacaccgtcttaaagtttaaaaagaccagcgtctccttcttt
cgaaccacccactcaatccctgatgctctaggagttgcagttcacactcccgacggggta
atcgttgaaactggtgattataagtttgacctgacgccggtgaccaacaccccgcctgac
ttacaaacgatggccaagctcggtgaagaaggagtgctgtgcctgatggccgacagtacg
aacgccgaaaaaccagtgtggaccaagtccgaacgctacgttagtgattcggtccgcaaa
attttcaaacgggtgaaggggcggattatttttgcaacctttgcttcgaacctctcccgg
gtgatgacggcgattgacgcggcctaccaaaacggacgtaaaattgccgtctttggtcgg
agcatggaagctgccgttgtcaacggtcgggaactcggttacatcaaggttcctgacaag
gcctttgtcgatgctaaccaacttaagtccctaccggccgacaaggtcatgattctatgt
accggttctcaaggagaacaaatggctgccctatcccgaattgccaacggtacccaccgg
cagatctcaattgaacctggtgacaccgtagtcctttccagtaacccaatccccggaaac
gtcttaagcgtgaaccgagtggttgacgaactggaagaagcgggcgccactgttatcaag
gggtatgctaatcacattcacacttctggccacggtggccaagaagaagaaaaattgatg
attcgcctcatgaagccgaagttcttcgtcccgattcacggtgaataccggatgcagaaa
attcacatggggcttgccgaacaatgtgggattcccaaggatcactgctttatcttgaaa
aatggtgacgtgctggccctgactaaggacagtgcccggatggcaggtaactttgccgcg
ggggacgtttacattgatggtaatggtgtggatacagttaccgaacaggtaatcgaagac
cggcaactgctttctgaagaaggcctggtggtggtcgttgctaccattaatttaaaggac
aaggaaattcaatccggtcctgatctcctttcccggggcttcgtttacatgcgtgaatcc
ggcgaactgcttgatcaaggtcgcaaattggtctttcggaccattcggcgggcgatgaat
aacaaaaacgccagtgaaaaaacgattaaaaaggccgttgtcaacgagttatccaacttc
ctctacgaaaagacggaacgccacccgttggttctcccaatgctaattatgaataacacg
aagtaa
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