Fructilactobacillus myrtifloralis: M3M35_06170
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Entry
M3M35_06170 CDS
T08864
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
fmt
Fructilactobacillus myrtifloralis
Pathway
fmt03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
fmt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
M3M35_06170 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fmt03400
]
M3M35_06170 (mfd)
Enzymes [BR:
fmt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
M3M35_06170 (mfd)
DNA repair and recombination proteins [BR:
fmt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
M3M35_06170 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
Cas3-like_C_2
SNF2-rel_dom
AAA_22
UB2H
IstB_IS21
CdvA
Motif
Other DBs
NCBI-ProteinID:
USS85814
LinkDB
All DBs
Position
1245951..1249490
Genome browser
AA seq
1179 aa
AA seq
DB search
MVKLTEVFEALPQYQTIMDQLQPGSRQLVTGTGGSAQKLLLQTMVQQRQQPLLYVTDTLE
HAEQAVKTFSTGLTDVPVLLFPAEELVAAEVATSSPEFRAERVQAMQALVAGKPVVVVAT
TAGLKRYLPEPADFQAAALTVKLGADWEREALQNQLVEMGYVRKNLVAVPGEFAIRGSIV
DIYPLNASNPVRLDFFDTEVDSLRSFDAATQRSIENLTTVTILPATDFLPTAADREHANH
AIHKQLATLTNEQARTELAQLAQEVTTKVTDPAWQAYASLLFRKETSILAYLPATGVVAF
DDYQRIRDANQQLERDETNWRTSVSVNHPGLADQKVSLNLTTVLKASQQPWLLLSLFQKG
LGRMRLDYISEIKVRPMQRFFGQMPMLKTEMERYQSEQTTVVIMVGSQDRLAKVQQTLQD
FGIEAVATTISKLVPSRIQIVTGTLPEGFELPAANFAVLTEHELFQRVTERAKPHRIRHQ
RFTNAERIKSYTDLKPGDYVVHVNHGIGRYDGMQTMEVDGKHQDYLTITYQKNAQIFIPV
TQLNLIQKYVAAEGQAPRLNKLGGNEWAKTKSRVAEKVDDMADELVDLYAQRSQTPGFAF
PDDDAYQAEFEAAFPYQPTPDQIRSTAEIKHDMEQPHPMDRLLVGDVGYGKTEVAMRAAF
KAVEAGKQVAFLVPTTVLAQQHYETLTSRFEDFPVEIGVLSRFNSAQQTKQTLADLKSGR
LDILVGTHRLLSNDVQYHDLGLLIVDEEQRFGVKHKEKLKELKQNVDVLTLTATPIPRTL
NMSMMGVRDLSVIETPPANRYPIQTYVMEQNDAAIVDGIRRELQRDGQVFYLHNRVKDIE
QKVDKLQTLLPDARIGYIHGQMTERQMEQILYDFMNGQYDVLVTTTIIETGIDMPNVNTL
FVEDADRMGLAQLYQIRGRIGRSNRVGQAYFMYQPDKVLTEAGENRLEAIKDFTELGSGF
KVAMRDLSIRGAGNVLGRAQHGFIDSVGYDMYTKMLNDAVARKQGKATQPTHPDASVDLG
VEAYLPDTYIPDQQQKIEIYKRMRQLENRDQFTELQSDLIDRFGEYPVAVARLLTIDLIK
SLADEAFIEQIKRTGQTLTVTFSRQVSDASESQTILRALATTKFRSTIKQVNGRFQVNLV
IQPTMTEEEWLAELNQFVQALVTQDQPEAATRKDEMNAN
NT seq
3540 nt
NT seq
+upstream
nt +downstream
nt
atcgtgaaattaaccgaagtttttgaagcgctcccccagtaccaaacgatcatggatcag
cttcagccgggatcacggcaattggtaactgggaccggtggtagcgcacagaaattactg
ttacaaaccatggtccaacagcgccagcaaccactcctctacgtaaccgatacgttagaa
cacgctgagcaggccgttaaaacctttagtaccggtctgacggacgtgcccgtactactc
tttccagccgaggagttagtggccgctgaagtagccaccagttctccagagtttcgagcg
gaacgggtgcaggcgatgcaggccctggtagctggtaagccggtggtcgtggttgcgacc
acggcgggtttgaaacgttatttaccagaacccgctgattttcaggcagcggccttgacc
gtgaaactcggcgctgactgggaacgcgaggccctccaaaaccagttggtggaaatggga
tacgtgcgcaagaatctagtcgcagtccccggggaatttgcgattcgtggttccattgtc
gatatttatccgttaaatgcctccaatccggtccgcttagatttttttgatacggaggtc
gattccctgcgtagttttgacgcagcgacccaacggagcattgaaaatttaacgacagtt
acgattctcccggcgacggatttcttgcccacggctgctgaccgggaacacgctaaccat
gcgattcacaagcagttagccacgcttactaatgagcaagcgcggaccgaattagcccaa
ctcgcccaggaagtgacgacaaaggttacggatcccgcttggcaggcctatgcctcgtta
ttgtttcgcaaagaaacgtcaattttagcgtacttaccagctacgggcgtggttgccttc
gatgattatcaacgaattcgggatgccaatcagcagctagaacgtgatgaaacaaactgg
cggacctcggtttctgtaaatcatcctgggttagcggaccaaaaggtgagtttaaacctc
accacggttttaaaagcaagccagcaaccgtggttactcttgtccctatttcaaaagggg
ctggggcggatgcgcttagattacatcagtgagattaaggtccgccccatgcaacggttt
ttcgggcagatgcccatgcttaaaaccgaaatggagcgctatcagtccgaacagacgacc
gttgtgattatggtaggcagtcaggaccgcctagcaaaggtgcaacaaacgctccaggat
tttgggatcgaagcagtagccaccaccatttccaagttggtgccgagtcgtatccaaatt
gtaacgggaacgctgccggaggggtttgaactgccagccgcgaactttgcggtgttgacg
gaacacgaactgtttcagcgggttacagaacgcgctaaaccccacagaatccggcaccaa
cgttttactaatgcggaacggattaaaagttacacggacttaaagcccggggactatgtc
gtacacgttaaccacggaattgggcgttacgatggcatgcaaaccatggaagtggatggg
aaacaccaggattatctcaccatcacttaccaaaaaaacgcccaaatttttattcccgtg
acccaactgaatttaattcaaaagtacgtggcggcggaaggccaagctccccggttgaat
aagctcggcgggaacgaatgggccaaaaccaaaagtcgggtagcggaaaaagttgatgat
atggcggatgaactcgttgacttatacgcccaacgatcccagacgcctggatttgccttt
cccgatgatgatgcttaccaggccgaatttgaggcggcgtttccctatcaaccgaccccc
gatcaaattcgaagtaccgctgaaattaaacatgacatggaacaaccccatccgatggat
cggttgttagtcggcgacgtgggttacgggaaaacggaagtggccatgcgggcggcgttt
aaagccgtggaagcgggaaaacaggtggccttcttggtcccaacgaccgtgttagcgcag
caacattatgaaaccttgaccagtcggtttgaggattttccggttgagattggtgtttta
tcacggtttaacagtgcgcaacaaaccaaacaaaccctggcggatttaaagtccggacgc
ctcgatattttagtgggaacccaccgcttattatccaatgatgtgcagtaccatgattta
gggctgttaattgtggatgaagagcaacggtttggggtcaagcacaaggaaaaactaaaa
gaactaaagcaaaatgtcgacgtcctaacgctcactgccacccccattccacggacttta
aacatgtcgatgatgggggtgcgggatttatccgtgattgaaacaccgcctgcgaaccgg
tatccgattcaaacctacgtgatggaacaaaatgatgcggcaatcgtcgatggaattcgg
cgtgaactccaacgcgacggccaggttttttacctgcacaatcgggtgaaagacatcgag
caaaaggtggacaagttacaaacattactgccggatgcgcgaattggttacattcacggg
caaatgaccgaacggcagatggaacagattttgtacgactttatgaacggtcagtatgac
gtattggtaacgaccaccattattgaaacggggatcgatatgccgaacgtcaacacgtta
ttcgttgaagatgccgatcggatggggcttgcccagttgtaccaaattcggggtcggatt
gggcgtagcaatcgggtcggccaggcgtacttcatgtatcaacccgacaaggtgttgacc
gaagcgggtgaaaaccggttagaggccattaaggactttacggagttaggatccggcttt
aaggttgccatgcgggatctgtccatccgtggcgctggaaacgtgttaggccgggcccag
cacggcttcattgattcggttggttatgatatgtataccaagatgttaaatgatgcggtg
gctcgcaaacaggggaaggcgacccaaccaactcatccagatgcgagtgttgatttgggc
gttgaagcctatcttcctgatacgtatattccagaccaacaacaaaaaattgaaatttac
aagcggatgcgccagttggaaaatcgcgaccagtttaccgaattacagagtgatttaatt
gaccggttcggtgagtatccggtggccgtagcccgcttacttacgattgatttaatcaag
tccttggcggatgaagcgtttattgaacaaattaagcggacggggcagaccctgaccgtg
acctttagccgccaggtttcagacgcgtcggagagtcagacgattttacgagcactggcc
accaccaagtttcggtcgacaattaaacaggttaacggccggtttcaagttaacctcgtc
attcaaccaacgatgacggaagaagagtggctggcggaacttaaccagtttgtgcaggcc
ttagtgactcaggatcaaccagaagcagcaactcgaaaggatgagatgaatgcgaattga
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