Fusarium musae: J7337_001387
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Entry
J7337_001387 CDS
T09538
Symbol
YTH1
Name
(RefSeq) RNA-binding component of cleavage and polyadenylation factor
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
fmu
Fusarium musae
Pathway
fmu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
fmu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
J7337_001387 (YTH1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fmu03021
]
J7337_001387 (YTH1)
03019 Messenger RNA biogenesis [BR:
fmu03019
]
J7337_001387 (YTH1)
Transcription machinery [BR:
fmu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
J7337_001387 (YTH1)
Messenger RNA biogenesis [BR:
fmu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
J7337_001387 (YTH1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-CCCH
zf_CCCH_4
Torus
zf-CCCH_2
zf-CCCH_4
GRP
Motif
Other DBs
NCBI-GeneID:
68309244
NCBI-ProteinID:
XP_044686830
LinkDB
All DBs
Position
1:4624158..4624916
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AA seq
252 aa
AA seq
DB search
MPGAVESPAAAILNHSATPYNFRFSPFLRQTYQVGLSPDRPICKAFQSGHCPNGTRCPER
HVSDSKTSQPSGGLNSLVCKHWLRGLCKKGEHCEFLHEYNLRKMPECNFFMRNGYCSNGD
ECLYLHIDPQSRLPPCPHYDMGFCPLGPNCSKKHVRRKLCVFYLAGFCPDGPECKEGAHP
KWSKDLEKPTLKSEEKKEDDIRMDPAQDDMDRSRDQQRDRDRDDGGRYRGGHGGHGGRGK
WRGRGRYRGRGH
NT seq
759 nt
NT seq
+upstream
nt +downstream
nt
atgcccggcgccgtcgaatctcctgccgccgccatcctcaaccactctgccacgccctac
aacttccgcttctcgccatttcttcgacaaacgtatcaggtcggcctgtctcccgaccgg
cctatatgcaaagctttccagtcgggccactgccccaacggcacacgatgtcctgaacgg
cacgtctctgattctaagacgtcacagccgagtggtggtctcaactcgctcgtgtgtaaa
cattggctgcgtggcttgtgcaagaagggcgagcattgcgagttcctccacgagtacaat
cttcgaaagatgcctgagtgtaatttctttatgcgaaacgggtattgctcgaacggtgac
gaatgtctatacctgcacatcgacccccaaagtcggctgccaccctgccctcactacgat
atggggttctgccccctcggacccaactgttcaaagaagcacgtgcgtaggaagctctgt
gttttctacttggcggggttctgtcccgatggacctgaatgcaaggaaggcgcccacccc
aagtggtcaaaggatctggagaagccaaccctcaagtcagaggagaagaaagaagacgac
attcggatggatcctgcgcaggatgatatggacaggtcacgcgaccaacagagagataga
gatcgggatgatgggggcagatatagaggaggccatggtggtcatggtggccgaggcaaa
tggcgaggaagaggccgttaccgtggaagaggtcactaa
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