Fusarium musae: J7337_008355
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Entry
J7337_008355 CDS
T09538
Symbol
SUB2
Name
(RefSeq) Suppressor of the cold-sensitive snRNP biogenesis mutant brr1-1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
fmu
Fusarium musae
Pathway
fmu03013
Nucleocytoplasmic transport
fmu03015
mRNA surveillance pathway
fmu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
fmu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
J7337_008355 (SUB2)
09122 Translation
03013 Nucleocytoplasmic transport
J7337_008355 (SUB2)
03015 mRNA surveillance pathway
J7337_008355 (SUB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fmu03019
]
J7337_008355 (SUB2)
03041 Spliceosome [BR:
fmu03041
]
J7337_008355 (SUB2)
Enzymes [BR:
fmu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
J7337_008355 (SUB2)
Messenger RNA biogenesis [BR:
fmu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
J7337_008355 (SUB2)
Spliceosome [BR:
fmu03041
]
Complex C
Other components
EJC/TREX
J7337_008355 (SUB2)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
J7337_008355 (SUB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
DUF4844
Motif
Other DBs
NCBI-GeneID:
68316211
NCBI-ProteinID:
XP_044678891
UniProt:
A0A9P8DDP7
LinkDB
All DBs
Position
6:1558214..1560204
Genome browser
AA seq
434 aa
AA seq
DB search
MSHEEDLIDYSDEEIGGNETTATTSNGKKGELAAGNNVDKKGSYVGIHSTGFRDFLLKAE
LIRAIGDCGFEHPSEVQQTCIPQALLGGDIICQAKSGLGKTAVFVLATLQQVEPVNGEVS
VVVMCHTRELAYQIRDEYNRFSKYMPDIKTGVFYGGTPIKTDMETLKNKDTCPHIIVGTP
GRLKALVRDKALRLGSVRIFVLDECDKMLDQPDMRTDVQDVFRATPPQKQVMMFSATLSE
EVKPICRKFMQNPTEHYVDEDTKLTLHGLQQFYIKLEEKEKNRKLNELLDELQFNQVIIF
VRSTVRATELDKLLRECNFPSIAVHSGVSQEERIRRYKEFKEFKKRICVATDVFGRGIDI
ERINLAINYDLSNDASSYLHRVGRAGRFGTKGLAISFVSTDQDQEVLKEIEKRFEVALPE
FPKEGVDASTYMAS
NT seq
1305 nt
NT seq
+upstream
nt +downstream
nt
atgtctcacgaagaagatctcattgattattccgatgaggagatcggtggtaacgaaacc
accgccaccacctccaacggcaagaagggcgagcttgctgccggcaacaatgtcgacaag
aagggcagctacgtcggcattcattccaccggtttccgcgatttccttttgaaggctgag
ttaattcgcgccatcggcgactgcggtttcgaacatccatcggaggttcaacaaacctgt
atcccccaggcactgctcggtggtgatatcatctgccaggccaagtctggtctaggaaag
acagctgtctttgttctcgctacccttcagcaggtcgagcctgtgaacggagaggtctcc
gtcgttgttatgtgccacacccgagagctggcttaccagatccgtgacgagtacaaccgc
ttcagcaagtacatgcccgatatcaagaccggtgtgttctatggtggaactcccatcaag
accgacatggagacactcaagaacaaggacacttgccctcacatcatcgtcggtactcct
ggacgtctcaaggccctcgttcgtgacaaggccctacgtctgggcagcgttcgcatcttc
gtgcttgatgagtgtgacaagatgcttgatcagcctgatatgcgcacggatgtgcaagat
gttttccgcgctacacctcctcagaagcaggttatgatgttctcggccaccttgtccgag
gaggtgaagcctatttgccggaagttcatgcagaaccccaccgagcactacgttgatgag
gacactaagctcactcttcacggtcttcagcagttctacatcaagctggaagagaaggag
aaaaatcgcaagctcaacgagcttctggatgaactccagttcaaccaggtcattattttc
gtccgtagcactgttcgtgccactgagcttgacaagctcctcagggagtgtaactttcct
tctattgccgtccactctggcgttagtcaggaagaacgtattcgtcgctacaaggagttc
aaggagttcaagaagagaatttgcgttgctaccgatgtctttggacgaggtattgatatt
gagcgaatcaacctcgccatcaactacgacttatccaacgatgccagctcctacctgcac
cgtgtcggtcgtgctgggcgattcggtaccaagggattggccatctcattcgtcagcacc
gaccaagaccaagaggtgctcaaggagatcgagaagcgattcgaagtcgcccttcctgaa
ttccccaaggagggtgtcgatgccagcacttacatggcctcttaa
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