Ferrovum myxofaciens: HO273_01960
Help
Entry
HO273_01960 CDS
T06614
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
fmy
Ferrovum myxofaciens
Pathway
fmy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fmy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HO273_01960
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fmy03019
]
HO273_01960
03009 Ribosome biogenesis [BR:
fmy03009
]
HO273_01960
Enzymes [BR:
fmy01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
HO273_01960
Messenger RNA biogenesis [BR:
fmy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HO273_01960
Ribosome biogenesis [BR:
fmy03009
]
Prokaryotic type
rRNA processing factors
HO273_01960
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Zn_ribbon_InsA
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
QKE37651
LinkDB
All DBs
Position
458560..461301
Genome browser
AA seq
913 aa
AA seq
DB search
MKRMLFNATHTEELRVAIVDGQKLIDLDIEYSGKEQKKSNIYKAVVSRVEPSLEAVFVDY
GADRHGFLPFKEIARTALNDEEGDFSRQRIASLLKEGQELIVQVDKDERGNKGAALTSFI
SLAGRYLVLMPNNPRGGGVSRRVEGEERAELRDVLTQLEVPAGMSLIARTAGIGRSAEEL
QWDLNYLLQLWAAIEVAATGQKGAFLIYQEGSLVIRAIRDLFQPDIGEILIDTELIYEQA
RQFMSHVMPGNVNKVKLYHDDVPLFSRFQIEHQIETAYRREVSLPSGGAIVIDHTEALVS
VDVNSARATRGADIEHTALNTNQEAADEIARQLRLRDLGGLIVIDFIDMENPRNQREVEN
RLRDALRYDRARVQTGKISRFGLLELSRQRLQPSLGETSHTPCPRCHGTGVIRDTESSAL
HILRILQEEAMKDNTAIVRAQVPVDVATFLLNEKRPDIYGIEARLKVHVMLIPNIHMETP
HYSVVRIRHDEANQMDFTEASYQLVEVPADNQEPRVHALTPSKPDRPVAAVRGITPQQPA
PMPVVRAPAPAALPAHTYREQERKGLFGTIIGWLKGNSASIGTRPEPASHLLPAEVKTVS
PVPARPEREDRRPPRQRRERRERSPQNRSPVLEAATQNEVTAPDTPAEAKSAPKPPRTQR
RIRPTDDSAPPLIVVAESSVEEVLEGDGVSTVPAEKEGRRRGRRGGRREKSRRFNGAIAP
AFPLSEADVLKKGDGDEDEVEVLQEPVSVRSDTEAALQVDAAPAVMPVPEAELEILLPEA
EKGDSSPSAEHLTLSLPVSSPETGAEQAPEPEAVSFAESTIQQPPLPAETALHKPVATVI
SAPATSLQQETLAVPPESGLVLVQTRATTLEPEELPAPVRRRRTARTRFIPAQSEPLMQV
ETQKSVTPPDIPE
NT seq
2742 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttgtttaacgccacacacacggaagaactccgggtggctattgtcgat
ggtcaaaaactgatcgaccttgatatcgaatattccggaaaggaacagaaaaaaagtaat
atttacaaagcagttgtcagtcgtgttgaaccttcgcttgaagccgtttttgtggactac
ggtgcagaccgccacggttttctgcccttcaaggaaattgcccgtaccgctctgaacgac
gaagagggtgacttttctcgtcaacgcatcgccagtttacttaaggaaggccaggaactc
attgtccaggttgacaaggatgaacgaggaaacaaaggggcggccctgacctctttcatc
agtttggcaggccggtatctggtgttgatgcccaataatccccgtggtggtggtgtttcg
cggcgagtggaaggagaagaacgcgctgaattgcgggatgttctcacccaactcgaagtc
cctgccggcatgtccctgattgcccgcaccgcaggcatcggtcgctccgccgaggagtta
cagtgggatctcaactatctcttgcaactatgggctgccattgaagttgctgccacaggt
caaaaaggcgcatttctgatttatcaggaaggaagtctggttattcgagcgattcgcgac
ctgttccaacccgatattggtgaaattctcatcgataccgaactcatttacgagcaggcg
cgccagttcatgagtcacgtcatgcccgggaacgttaacaaggttaagttataccatgat
gacgtaccactcttctcgcgctttcagatcgaacaccagattgaaacggcctaccgtcgt
gaagtcagtctaccttccggaggggccatcgtcatcgaccataccgaggccctggtctct
gtagacgtcaactcggcccgtgccacgcggggtgctgatatcgaacatacagctctcaac
accaatcaggaagcggccgatgaaattgctcgtcaattgcgtttgcgcgacctgggtgga
ctgatcgtcatcgatttcatcgatatggagaacccgcgcaaccagcgcgaagtggaaaac
cgcttgcgtgacgccctgcgctacgatcgggcgcgcgtccaaaccggcaagatttcccgc
tttggtttgctcgaactgtcccgtcaacgcctgcagccttccctcggagaaaccagtcat
accccttgcccacgctgtcatggaaccggggtgatccgcgatacggaatcctctgccctg
catattctgcgtatcctgcaagaagaagccatgaaggataatacggccatcgtgcgtgct
caagtaccggtggatgtcgccactttcctgctcaatgaaaagcgtccagacatctatggt
atcgaggcccgtctcaaggtccatgtcatgctgatccccaatattcacatggaaacgccc
cactattctgtggtacgcattcgccatgatgaagccaatcaaatggatttcacggaagcc
agttaccagttggtggaagttcccgcggataatcaggaaccccgggtccatgcgctcacc
ccttccaagcccgaccggcccgttgccgcagtccgcggcatcacccctcagcaacccgcg
cccatgcccgtggtccgcgcccctgcacctgccgctctacccgcccatacctatcgtgaa
caggagcgtaaaggtttgttcgggaccatcataggttggctgaaaggcaactccgcatcg
atcgggacccgtcccgaacctgcctcgcatcttcttcctgccgaagtcaagacggtgtcc
cctgttcccgctcgccccgaacgagaggatcgtcgccccccccgtcaacgaagagaacga
cgggaacggagtccgcaaaaccgctctccagtccttgaggccgccacccagaatgaagtg
accgctccagataccccggcggaagcaaagtctgcccccaagcccccccggacacaaaga
agaatccgtcccacggatgactctgccccaccccttatcgtagtggcagaatcatccgtt
gaggaagtcctggaaggagatggcgtcagcaccgtgccggcggaaaaggaaggtcggcgt
cggggacgacggggaggacgacgtgaaaaatctcgtcgtttcaatggagccattgcgccc
gcttttcctctctctgaggcagatgtactgaagaaaggtgatggggatgaagatgaggtg
gaagtgcttcaagagcctgtttccgtccggtctgacacagaagcggcccttcaggttgac
gctgcccctgcagtgatgcccgtgcccgaggccgagttggaaattctattgcctgaagca
gaaaaaggtgattcctcgcccagtgcagagcacttaaccctctctctccctgtatcctcg
ccggaaacaggggctgaacaggctcctgaacctgaagcagtttctttcgcagaatctacc
atccagcaacccccattacctgcggaaacggccctccataaacctgtggctacggtaatt
tcggctcctgcaacgtcacttcagcaggaaacgctggccgtccctcccgaatccggtctg
gtgttggtgcagactcgtgccactaccctggaaccagaggaacttcctgccccggtacgg
cggcgacgcacggcacgcacgcgcttcattcctgctcaaagtgagcctttgatgcaggtg
gaaacgcaaaaatcggtgacgcctcctgacatccctgagtaa
DBGET
integrated database retrieval system
