Ferrovum myxofaciens: HO273_02200
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Entry
HO273_02200 CDS
T06614
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
fmy
Ferrovum myxofaciens
Pathway
fmy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fmy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HO273_02200
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fmy03019
]
HO273_02200
03400 DNA repair and recombination proteins [BR:
fmy03400
]
HO273_02200
Enzymes [BR:
fmy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HO273_02200
Messenger RNA biogenesis [BR:
fmy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HO273_02200
DNA repair and recombination proteins [BR:
fmy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
HO273_02200
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
QKE37692
LinkDB
All DBs
Position
complement(514387..516957)
Genome browser
AA seq
856 aa
AA seq
DB search
MNFGFAKLQEILAQWPTLEVSQETASDSLMERIRQVLLKFSFEGKLQKSDLQPLLRHLLL
RESINSNHEKNLRIPAASDWPTALEWNSHGVSAMNVGSDAFLLTALPWYPEWLGVGESGA
FADSFSDKVVREEGLCSADPFISDVTGYTHYSSPGQREAIRAAFLIPSGDTLIVNLPTGS
GKSLVGQAPALVHRQEGNLTLFVVPTVALAIDQARQMEKYFRSFGNNTQTWPLAWYGGVS
EEDRSEIRRRMREGTQRILFTSPEALTTSLLRTVFEVARNGMLRYLVIDEAHLITQWGDE
FRPAFQALAGLRNSLLRKGEEEKVEPFRTLLLSATFTPETIDTLANLFGPPSRVQMVAAV
HLRPEPQYWFSRANSSVEKQEQVLEALRNAPRPFILYVTKRNDAIFWSNLLKNYAGYHRV
ERFDGDTPDQKRKEIITAWIENKLDGVVATSAFGVGIDKGDVRSVIHATIPETLDRFYQE
VGRGGRDGMSSVSLLVYEDADWTLSKSMANPTIISNELGISRWRALYESRKKYDREGDLF
RVDPQAVRQGLPGSNDENVKWNMRTLLLMSRAGFMELDVEPNSVPEGDADDLEPSSPFAA
MAIVRIRLLRNDHLLPQAWDDAISLSRSNTLNGGVRNLRLMQGLLQGGSEVAETLAELYR
NNSERWPVVVTLVCGGCPSDRFGDKRRSHYHVPVATPVHNLPQLDLLVWKSTFPYLNDPR
FIAVFYEPGTTLSAIVRFIKWLVTACGVQEVCASDTSSILELPDWCQLYRHAPSGVVVHR
NLRQMNEEPYSPLARVTFFDTSVTAQEMDQVLLMQRPMHLVFYPSDTRDPNNPLRLVSDT
AINSVRFDQLNAVINQ
NT seq
2571 nt
NT seq
+upstream
nt +downstream
nt
atgaattttggttttgccaagttgcaggagatcctggctcagtggcccacgctcgaagta
tcgcaagagactgcgagcgactctctcatggagcgtattcgacaagtgttgttaaaattt
tcgtttgagggaaaacttcagaaatcggatctacaaccattacttagacatttgttactt
cgggaatccattaactcgaaccatgaaaaaaacttgcgtattcctgctgcttcggattgg
ccgactgctttagagtggaactctcatggcgtttcggcaatgaatgttggttctgatgct
tttcttttgacagcgttaccttggtatccggagtggctcggggttggtgaatcaggagca
ttcgcagattcattctccgataaagttgtcagagaagaaggactctgttcggcggatcct
tttatctctgatgtcacgggatacacccactactcaagcccagggcaacgcgaagcaatt
cgagcagcctttttgatcccttctggtgatacattgatagtgaacttaccaacgggttcg
ggcaagagtcttgttggtcaagcgcctgctttggttcatcgccaagagggtaaccttact
ctgtttgtagtaccgacggttgcgcttgcaatcgatcaagccagacaaatggagaaatac
tttcgtagtttcggtaataacacacaaacttggcctttagcttggtacggcggtgtgtcg
gaagaagatcgatctgaaatacgtcgtcgtatgcgtgagggtacgcaaaggatattgttt
acctcgcctgaggcactaacaacctcacttctacgtacggttttcgaggtggcccgcaat
ggaatgcttcgttaccttgtaattgacgaggcgcacttgatcacgcaatggggagatgag
tttcgtcccgcatttcaggcattggcaggcttacgaaacagtttgcttagaaaaggggaa
gaagaaaaagttgaaccctttcgtactttattattaagcgctactttcacgccagagaca
attgatacacttgcaaacctttttgggccacctagccgtgtgcagatggttgcggctgtc
catttgcggccagagccacaatattggttctcacgtgcgaattcttcagtggaaaagcaa
gaacaagttctagaagcactaagaaatgcacctcgaccgtttattctttatgtaaccaag
cggaatgatgcaatcttctggagtaaccttttaaagaattatgcgggttatcatcgagta
gagcgtttcgatggcgatacccctgatcagaaacggaaagaaattattactgcctggatt
gaaaataaactggatggggtagtcgccacatcggcttttggagtgggaatcgacaaaggt
gatgtgcgttcagtaattcatgccactatcccggaaacattagatcgtttttatcaagaa
gttggccgtggtggacgtgatggaatgtcgtcagttagcttgctggtttatgaagatgca
gactggacgttatccaagagtatggccaatccgacaattatttctaatgagcttggcatc
tctcgttggcgtgcactttacgagagcagaaagaaatacgatagagaaggcgatctcttt
agggttgatccacaggcagtaaggcagggtctcccgggaagcaatgatgagaacgttaag
tggaacatgagaacgctattactcatgtcacgtgcaggttttatggaacttgatgttgaa
ccgaatagtgtgccagaaggtgatgctgatgacttagaaccctcttctccatttgccgca
atggccattgttcggattcggttgttacgaaatgatcatttgctaccccaagcatgggat
gatgctatttctctttcgagaagcaatactttaaatgggggtgttagaaatcttcgcttg
atgcagggtttgcttcagggaggaagcgaagttgcagagactttggcggagttgtatcgc
aataattcagagagatggccagttgttgtgacactggtttgcggtgggtgtccatctgat
cgatttggtgacaagcggaggagtcattatcatgtcccagttgcaactccggttcacaac
ctaccacagcttgatttattagtctggaagtcaacatttccatatcttaatgatccaaga
tttattgccgtcttttatgaacctggaacgaccttatcggcaattgtacggtttattaaa
tggttggtaaccgcatgtggtgttcaggaagtatgcgcatcagatacatcttcaattttg
gaattacctgactggtgccaattatatcggcatgcgcctagtggggtagtggtgcatcgt
aatcttagacaaatgaatgaggaaccctattcccctttggcgagggtgacattttttgat
actagtgtcactgcacaagaaatggatcaagttttgttgatgcaacgtccgatgcacttg
gtgttttatccatctgacactcgtgatcccaataacccacttcgacttgtttctgataca
gcaataaattcagtacgttttgaccaacttaatgcggtaatcaatcaatga
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