Ferrovum myxofaciens: HO273_07930
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Entry
HO273_07930 CDS
T06614
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
fmy
Ferrovum myxofaciens
Pathway
fmy02020
Two-component system
fmy02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
fmy00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
HO273_07930
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
HO273_07930
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fmy03021
]
HO273_07930
Transcription machinery [BR:
fmy03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
HO273_07930
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_38
HTH_23
HTH_IclR
Xre-like-HTH
Motif
Other DBs
NCBI-ProteinID:
QKE38663
LinkDB
All DBs
Position
complement(1699525..1700940)
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AA seq
471 aa
AA seq
DB search
MKVQLQLKQTTQLSLTPQLQQSIRLLQLSTQELEQEVEEFLRLNPLLERADGKDGAVDSE
PGAFETADHIETAEPTSSAEIEQESWNFEEGSGIGLGGQGEDEDEGIQDLRVIPLSLRDH
LLGQVRLMPLEERDQELVATLIDYLDEDGYLRHSFIDLNSSVSDALGEVEESEWLVALRI
LQSLDPAGIGARTLSECLELQLLASHATEEDKRLGKKLLDHLEWLAQREYTRLRRALGIE
ERKVRELQQMLLHFDPRPGAAFSTAETRYVVPDVIVRRTERGWSVSLNEGVMPRLRVNQV
YANILKKGVPGHSMSQQLQEARWLIKNIQQRFDTILRVACAVVERQKDFLERGEVGMKPL
VLREIAEVLGLHESTISRVTVQKYLLTPRGLFELKYFFSSHVGTDSGEAASSTAVRALIR
QLINQEDIKSPLSDQRIANLLGERGFQVARRTVAKYREAMHLPAASLRKSL
NT seq
1416 nt
NT seq
+upstream
nt +downstream
nt
atgaaggtccagctccaactcaagcaaacgacgcaactctccctgacgccgcagttgcag
caatcgattcgattgttgcaactctctacccaggagttggaacaggaagtcgaagaattt
ctccggctcaatcctctgctggaacgtgccgacgggaaagatggtgccgttgattcagag
cccggcgcgtttgaaactgcagaccacattgaaacagcagaacccacctcttctgccgaa
atcgagcaggaatcctggaatttcgaagaaggaagcggcatcggattgggggggcagggc
gaagatgaggatgaggggatacaggatctgcgtgtaattccactgtccctgcgcgatcat
cttctggggcaggtacgtctgatgcccctcgaggaacgggatcaggaactggtggccaca
ctgatcgattacctggatgaagacggttacctgcgccattccttcattgatctgaattcc
agtgtatccgatgcgctcggagaggtagaagaatcagagtggctggtggccctgcgcatt
ctgcaatccctggatcccgcggggattggggcgcgtaccttgagcgagtgcctggaactg
caattgttggccagccatgcgaccgaggaggataaacgactgggcaaaaaattgctcgat
caccttgaatggctggcacaacgggaatacactcgtctgaggagagctttgggcatcgag
gaacgcaaggtcagggaattgcagcagatgttgttgcacttcgatcctcgtccgggggcg
gcgttcagtacagccgaaacccgttatgtcgtgcccgatgtgattgtaagacggacggag
cggggttggagtgtatcgctgaatgagggagtaatgccacgtctgcgcgtcaatcaggtc
tatgccaacattctcaagaaaggggttccgggtcactccatgtcccaacaacttcaggaa
gcacgttggttgatcaagaatatccagcaacgttttgacacgattttacgggtggcctgt
gctgtagtcgagcgacaaaaagattttctggagcggggtgaggtcgggatgaaacctctg
gttttgcgcgaaattgctgaagtgttgggactccatgaatccactatttcgcgcgtgact
gtccagaagtatctgttgactccgcgcggtttattcgaattaaaatatttcttcagcagc
catgtggggacggacagtggcgaagcggcttcctccaccgctgttcgtgccctgatccgt
caattgatcaatcaggaagatattaaaagtcctctgtccgaccagcgtattgcgaatttg
ctgggcgagcgggggttccaggtggcaaggcggaccgtggccaagtatcgtgaggccatg
catcttcctgccgccagtttgcgcaagtcgttgtga
DBGET
integrated database retrieval system
