Francisella orientalis Toba 04: OOM_0634
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Entry
OOM_0634 CDS
T02112
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit/160 kD subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
fna
Francisella orientalis Toba 04
Pathway
fna03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
fna00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
OOM_0634
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fna03021
]
OOM_0634
03400 DNA repair and recombination proteins [BR:
fna03400
]
OOM_0634
Enzymes [BR:
fna01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
OOM_0634
Transcription machinery [BR:
fna03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
OOM_0634
DNA repair and recombination proteins [BR:
fna03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
OOM_0634
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
AFJ43141
LinkDB
All DBs
Position
620337..624587
Genome browser
AA seq
1416 aa
AA seq
DB search
MNNGILHQNYNSKKFDIIKISLASPEVIRSWSHGEVKKPETINYRTFKPERDGLFCAKIF
GPIKDYECLCGKYKRLKHRGVVCERCGVEVEQAKVRRERMGHIDLVCPVVHIWYLKSLPS
RIGLFLDMPLKNVEKVLYFESYIVTDPGMTPLEKKQLLTDDEYAEALENYGYEFEASMGA
EAIRDLLADTDLETEIESLQAEYEESKSTAKKEKAIKRLRLLETFQASGNKPEWMVMTIL
PVLPPDLRPLVPIEGGRFATSDLNDLYRRVINRNNRLKKLLDLNAPDIIVRNEKRMLQEA
VDALLDNGRRGRAVTGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPSLR
LHECGLPKKMALELFKPFVYSKLRLGGYATTIKQAKRMVELEEAVVWDILEVVINEHPVL
LNRAPTLHRLGIQAFEPKLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLTVESQLEARV
LMMSTNNILSPASGQPIITPTQDIVLGLYYITREKEGARGEGKLFSNYDDVSRAYNSGTI
DIHAKIKLRIDRQVFDTKGNTYNEKGVVNTTVGRALLLNILPEGLSFSLLNKVLVKKEIS
KIVNQAFRVLGGKATVVLADKLMYAGFKYSTLSGVSVGVDDMTIPETKEAKVEEAEKEIK
HITGQYQSSLITENERYNNIINIWSKTSDEVGASMMDAISKDTVMVNGKNKEIESFNSVY
MMAKSGARGSYNQMRQLAGMRGLMAKPDGTMIETAITANFREGLSVLQYFTSTHGARKGL
ADTALKTANAGYLTRRLVDVAQDLVVIEEDCGTDDGLMFSAIVEDGEVKVPLIERALGRT
LAADVVTEKGVVLLESGTLLDENLVEILDDNGIDMIKVRSPITCKTRRGLCAKCYGRDLA
RERKVNVGESVGVIAAQSIGEPGTQLTMRTFHTGGAASLGITVSDIKVKTAGKIKFKNIR
TVTNKDDQNIVISRAGKIIVSDTMGRVREQHKIPMGAVVPLASGKGVEIGDVIATWDPHA
QPLITDVAGKVVLEDVIDSITSKHTYDDLTGQQTIEITSISQRTTSKNLKPVVKVVDEKG
NELKSISLAVGAVLNVTDDSVLEVGDVVAKIPLEGSKNKDITGGLPRVAELFEARRPKDA
AILSPCDGMVRLGNRDTKEKQRIEILDKSGHIAEEILLPKSRHLVVFDGEQVLKGNVLAD
GPTDPHDLLKYKGLEAFADYILIEAQSVYRMQGVVINDKHIETIVRQMLRKATILDEGDS
KFVKDESIELVRILEENDRLAKEGKRLIEYELTLMGITRSSLSTESFLSAASFQETTRVL
TEASIHSQVDQLRGLKENVLIGRLIPTGTGFAVRKESNKIEKMREELGVEDNMILTEASS
FNTEDTAFENQIEKEDKDINDDIEESLRNALESLDF
NT seq
4251 nt
NT seq
+upstream
nt +downstream
nt
atgaataacggtatcctacatcaaaattacaatagtaaaaagtttgatattattaaaata
tctttagcatctccagaggtcattcgttcatggtctcatggtgaagttaaaaaaccagaa
actataaattatagaacatttaagcctgagagagatggtttattctgtgctaaaatcttt
ggtccaataaaagattatgaatgcttgtgtggtaagtataaaagacttaagcatcgtggt
gtagtatgtgagcgttgtggtgttgaggtagagcaagctaaagtacgtagagaaagaatg
ggtcatatagatttagtatgcccagtggtacatatatggtatctaaaatctttgccttct
agaataggtctattccttgatatgccattaaagaatgttgagaaggtactatattttgag
tcttacatagttacagatccaggtatgacacctctagagaaaaaacagcttcttactgat
gatgagtatgctgaagctttagagaactatggttatgagtttgaagcatctatgggtgca
gaagcaatcagagacttattggcagatacagatcttgaaactgagattgagtcgctacaa
gctgaatatgaagagagtaaatctacagctaaaaaagagaaagctatcaagagattaaga
ctacttgaaactttccaagcatctggcaataaacctgagtggatggtaatgactatacta
ccagttttaccaccggatttaagaccattagttccaattgaaggcggtagatttgcgaca
tctgatcttaatgatttatatcgtagagtaattaatagaaataatagacttaaaaaacta
ttagatctaaatgctcctgatattattgttagaaatgaaaagagaatgttgcaggaagct
gtagatgcattgctagataacggtagacgtggtagagctgtaacaggttcaaataagcgt
ccgcttaaatctcttgctgatatgataaaaggtaagcagggtcgtttccgtcaaaaccta
cttggtaaacgtgtagactattctggtcgttctgtaattacagttggcccatcattgaga
ttacatgagtgtggtttacctaaaaagatggcattagagctatttaaaccttttgtatac
tctaagttaagactaggtggctatgcaacaactatcaaacaagctaagagaatggttgag
cttgaagaagccgttgtatgggatattttagaagttgtgatcaacgagcatccagtttta
ttaaaccgcgcccctacgcttcatagattaggtattcaagcatttgagcctaagctaatt
gaaggtaaagctatacagttacatcctctagtttgtgcagcatttaacgccgatttcgat
ggtgaccaaatggcggtacatgtacctttaactgtcgagtcgcagttagaagctagagta
ttgatgatgtctacaaataacatcttatctccagcatctggtcagccaattattactcct
actcaggatattgtattaggtctatactatatcactagagagaaagagggcgctcgaggc
gaaggtaaattattctcaaactatgatgatgttagtagagcatataattcaggcactata
gatattcatgctaaaattaaacttagaatagatagacaagtttttgatactaaaggcaat
acttataacgagaaaggtgttgtaaatactactgtaggtagagcattgcttttaaacata
ttgcctgaaggtttgtcattctcgctattgaataaagtgcttgttaagaaagaaatctct
aaaatcgtcaaccaagcatttagagtgctaggtggtaaagcaactgtagttttagctgat
aaactaatgtatgcaggtttcaaatactcaacattatcaggtgtttctgtaggcgttgat
gatatgacgatacctgaaactaaagaagctaaagtcgaagaagcagaaaaagaaattaag
catattacagggcagtatcagtcatcattaattacagagaatgaaagatacaataatatt
atcaatatttggagtaaaacttctgatgaggttggtgcttcgatgatggatgcgatttca
aaagatactgtaatggtaaatggtaagaataaagaaatcgaatcgtttaactctgtatat
atgatggcaaaatcaggtgctaggggttcttataaccagatgagacagcttgcaggtatg
cgtggtctaatggctaagccagatggaacgatgattgaaactgctattacggcgaacttt
agagaaggcttgtcagtattgcagtactttacatctactcacggtgctcgtaaaggtcta
gcagatacggcattgaagacagctaacgctggttacctaactcgtagacttgtagatgtt
gcccaagatttagttgttattgaagaagattgcggcactgatgatggcttaatgttctca
gctattgttgaagatggtgaagttaaagttcctctaatagagagagctttaggtagaacg
ctagctgctgatgttgtgactgaaaagggagttgttctattagaatccggtactctgctt
gatgaaaatcttgttgagatacttgatgataatggtattgacatgatcaaagttagatct
ccaattacatgtaaaactcgtagaggcttatgtgctaagtgttatggtcgtgaccttgct
cgtgaaagaaaggtcaatgtcggtgagtctgttggtgtaattgctgctcagtcaattggt
gagccaggtacacagcttacgatgagaacattccatactggtggtgcggcatcattaggt
attacagtatctgatattaaagttaaaactgctggtaagattaagtttaaaaacatcaga
acagttacaaataaagatgatcaaaacatagttatatcgagagctggtaaaatcatagtt
tctgatactatgggccgtgttagagagcaacataaaatccctatgggtgcagttgttcct
ttagcaagtggcaagggtgttgagattggtgatgttatagctacttgggatccgcatgct
cagccactaattacagacgttgctggtaaagttgttctggaagatgttattgatagtatc
acatcaaagcatacatatgatgatttaactggtcagcaaactattgagataacttcaata
tctcaaagaacaacatctaagaacctaaaaccagttgttaaagttgttgatgagaaaggt
aatgagcttaaatcaatttcattagctgtaggtgctgtattgaacgttactgatgattca
gtgttagaggttggtgatgttgttgctaagattcctttagaaggctctaagaataaggat
attaccggaggtcttcctcgagttgctgaactttttgaggcgagacgtccaaaagacgct
gcaatattatcaccttgtgatggtatggttagattaggtaacagagatactaaagaaaag
caaaggattgaaatcttggataagagcggtcatattgctgaagagatactattacctaaa
tctagacatctagtagtttttgatggtgaacaagtattaaaaggcaatgttttagcagat
ggtcctactgatccacatgatcttcttaagtacaaaggtttagaagcgtttgctgattat
attttaattgaggctcagtctgtatatcgtatgcaaggtgttgtaattaacgataagcat
attgaaacgatcgttagacagatgttgagaaaagcaacaattcttgatgaaggtgatagt
aagtttgtcaaagatgaaagtattgaattagtaagaatacttgaagaaaatgatagacta
gctaaagaaggtaagagattgattgagtatgagcttactctgatgggtatcactagatca
tcgttatctacagagtcattcttgtctgcggcatcattccaagaaacgactagagtatta
actgaggcttcaatacattctcaagttgatcaattaagaggacttaaagaaaacgttctt
attggtagacttatacctacaggtacaggatttgcagttagaaaagagtctaataagatt
gagaagatgagagaagaacttggtgtagaagataatatgatactcacagaagcatcatca
tttaacactgaagatacagcatttgagaatcagattgaaaaagaagataaagatattaat
gatgatattgaagaatcgttaagaaatgctctagaatctttagatttctga
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