Francisella orientalis Toba 04: OOM_0897
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Entry
OOM_0897 CDS
T02112
Name
(GenBank) ATP-dependent exoDNAse (exonuclease V) beta subunit
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
fna
Francisella orientalis Toba 04
Pathway
fna03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
fna00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
OOM_0897
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fna03400
]
OOM_0897
Enzymes [BR:
fna01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
OOM_0897
DNA repair and recombination proteins [BR:
fna03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
OOM_0897
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_12
AAA_22
HPD
Motif
Other DBs
NCBI-ProteinID:
AFJ43367
LinkDB
All DBs
Position
888871..892428
Genome browser
AA seq
1185 aa
AA seq
DB search
MTNLDAKTIILQGHHIIEASAGTGKTFNITELYIRLLVEKRLLPSQTLVMTFTKDATQEI
IGRVEAKIRDVLEDISEGKQVKVSIKGRDTLIQKGDENYKHLKRSLLEIDEAAIFTIHGF
CKKVLSEQAFASGMEMDVSMEVDTSDILQKVVEDFFRKHINKNKTNFEYLQAYKLHTPDM
FLDKLRKVVRANYEILTKQSISLDEFKILKKQQLELFINNQDTVDYFLSKLGKGEPQGKR
VDEYHRVLEWLKLDNEALFPHDVSIITDGRKTSVKLIKPILAGIKELRDLQEEIKRANAA
QFIKQACLQIRQDFIKAKEQNGVLDFDDLITKLCHSVKKSPDLVKTLQHQYPVALIDEFQ
DTDAEQYEILDTIYPQSNKLPHKSSADTPSSQRGIDDLLLLMIGDPKQAIYGFRGGDIFT
YLKAKDSCSNDNQWSMDTNWRSIREMIKAYNRLFYKQDYQLEEEGQVGANIFSDGIGYQL
VKASPNADKKARDFDDNIKPINYFYYQVAEDDNKSDIDNNLSAWTANEIVRLLNSKKVIE
SDIAILVENSNQAKVIQKALQAKKLSSVYLSQRDNVYHSQEAKEILALMEGINDLENKSM
LKKALSTILLGGTAAKFIDYIDENDVSAWDEEIEKAKSLRQQWHKYGFMAFIMQIIHQNF
IQRSDSKERVITNILHLAELIKVAENKYKHPNQLIKWYRQQLNSTATSEGELRLESDDNL
IKITTIHGSKGLEYSVVFIPFASYVSKKKFEASDFSKYYDKHLKQTVYKIGKDDSIKPQI
ENEVIEELMRLFYVAVTRAEHRCYIGVAKYSNSEKSPLARFLGYQKDDDWLEKIQNITAN
PTNQSSLIDVATSHCYENENLITNDQFDHDTLQNLKANDIKKLANDSWEMLSFSKISKSK
VQNTALEKENDESEDDSAQKSQQELEFRFTASKGADIGNILHNVLEHADFSLGKINDNLL
QEQMGRYKVVAAEDFDKLKVWLEECLVASIPSIETEDFSSNDIQYDLFDIKDKGFCLKDI
SNTKPLKEAEFYFPITNEKLYKKNIIKILAEYRNQIIDYDEFASQKIFGMLHGFIDLIFE
YDGKFYVADYKSNYLGDKLEDYNQATMSEKNQSSFYDLQYLIYSVALDKYLRQNIESYNY
EKHFGGVYYFYLRGMKDGYGVYRARPSLEIINKLANLFNGGDYHV
NT seq
3558 nt
NT seq
+upstream
nt +downstream
nt
atgactaatctagatgcaaaaacaataatcctacagggtcaccatattatcgaggctagt
gctggtaccggcaagacttttaatattactgagttatatattcgcttattagtagagaag
agacttttaccaagtcagacactagttatgacctttaccaaagatgccacccaagagatt
atcggtagagttgaggctaagattagagatgtattagaggatatttctgaaggcaaacag
gtcaaagtttctataaaaggacgagatactctgattcaaaaaggtgatgagaattataag
catctaaaaagatcattacttgagatagatgaggcagctatttttactatccatgggttt
tgtaaaaaagtcttaagtgaacaagcatttgctagtggtatggagatggatgtctctatg
gaggtcgatacttcagatattttgcaaaaagtagtagaggatttttttagaaaacatatc
aataaaaacaaaaccaactttgaatatttgcaagcatataagctacatactccagatatg
tttttggataagctaagaaaagttgttagagctaattatgagattttaacaaagcaatct
ataagtttagatgagtttaagatactcaaaaagcaacagttagagttgtttattaataat
caagataccgtagattatttcttatctaaattgggaaaaggcgagccacagggcaagaga
gtagatgaatatcatagagttttagaatggttgaaattagataatgaagcattatttcca
cacgatgtatctataattacagatggcagaaagacaagtgtaaagctaataaaaccaatt
cttgctggtatcaaagaattaagagacctacaggaagaaataaagagagcaaatgcagct
caattcatcaaacaagcctgcctacaaatccgccaagattttataaaagccaaagagcaa
aatggagttttggattttgatgatttgattactaaactttgtcatagtgtcaaaaagtct
ccagatttagtcaagacattacaacatcaatatccagttgctcttattgatgagtttcaa
gataccgatgctgagcagtatgagattttggatactatttatcctcagagtaataaacta
cctcataagtcttcggcggacaccccttcgtcccaaaggggaatagatgatttgttattg
ctaatgataggcgatccaaagcaggcaatctatggttttagaggtggggatatttttaca
tatctaaaagctaaggatagttgttctaatgataatcagtggagcatggacactaactgg
cgctcaattagagagatgataaaggcctataatagacttttttataaacaagattatcag
ctagaagaagaggggcaagttggggctaatatttttagcgatggtataggctaccaactt
gtcaaagcatcaccaaatgctgataagaaagcaagagatttcgatgataacattaaacca
ataaattatttttattatcaagtagctgaagatgataataaaagtgatattgataataat
ttatcagcatggacagcaaatgagatcgtcagactattaaattcgaaaaaagttatagaa
agtgatatcgcaattttggtagaaaatagtaatcaagcaaaggttattcaaaaagctcta
caagctaaaaaactaagctcagtatatctaagccagcgcgataatgtatatcatagtcaa
gaggctaaagagatattagctcttatggaaggtataaacgatcttgaaaataaatctatg
ctaaagaaagcattatcaactattttacttggtggtacagcggctaagtttattgattat
attgatgaaaatgatgtctcagcatgggatgaagagatagaaaaagctaaatctctaaga
caacaatggcataaatatggttttatggcatttattatgcaaattatacatcagaatttt
attcaaagatccgattcaaaagagcgtgttattacaaacattctccatttagcagagctt
ataaaagtagctgagaataaatataaacacccaaatcagctaatcaagtggtatcgccaa
cagctaaatagtacagctacaagtgagggcgaacttagattagagagtgatgataacctg
attaagataactacaattcatggctcaaaagggcttgagtactctgttgtatttatacca
tttgcaagttatgtaagtaaaaagaaatttgaggcgagtgatttctctaaatactatgat
aaacaccttaaacagacagtctataaaattggtaaggatgacagtataaaaccacaaata
gaaaatgaggttatagaggaattaatgcgcctgttttatgtagctgtcacacgtgcagag
catagatgttatattggagttgcaaaatatagtaatagcgaaaaatcaccattagcaaga
tttttaggttatcaaaaagatgatgattggttagagaaaatccaaaatataacagcaaat
cctactaatcaaagttcgcttatagatgtagctacaagtcattgttatgaaaatgagaat
ttaattacaaatgaccaatttgaccatgatactttacaaaacctcaaagcgaatgatatt
aagaagttagcaaatgatagttgggaaatgctgtctttctcaaaaatatcaaagtcaaaa
gttcaaaataccgcattagaaaaagaaaatgatgagtctgaagatgatagtgctcaaaaa
tctcagcaggaattagagtttagatttacagcttccaaaggagcagatattggtaatatt
ttgcataatgttttagagcatgcggattttagcttaggtaagataaatgataatctttta
caagagcaaatgggtaggtataaagtagttgctgcagaagattttgataagcttaaagta
tggttagaagaatgcttagtcgcgtctataccttctatagaaactgaagattttagttct
aatgatattcaatatgacttgtttgatatcaaggataaaggcttttgcttaaaagacatc
tctaatacaaaacccttaaaagaagcagagttttattttcctataacaaatgaaaaacta
tataagaaaaatattatcaaaattttagcagaatatcgtaatcagattattgattatgat
gagtttgctagtcaaaagatttttggtatgcttcatggttttattgatttgatttttgaa
tatgatggcaaattttatgtggcagattataagtcaaattatttaggtgataaattagaa
gattataatcaagctactatgagtgagaaaaatcaaagtagcttttatgatttacaatat
ctaatatatagcgttgctttggataagtacctgcgacaaaatattgaaagttataattat
gaaaagcattttggcggagtatattatttctatcttagaggtatgaaagatggctatggg
gtttatcgagctagaccaagtttagagattatcaataagcttgctaatctatttaatggg
ggtgactatcatgtataa
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