Francisella orientalis Toba 04: OOM_0995
Help
Entry
OOM_0995 CDS
T02112
Name
(GenBank) DNA/RNA helicase supeorfamily I protein
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
fna
Francisella orientalis Toba 04
Pathway
fna03420
Nucleotide excision repair
fna03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
fna00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
OOM_0995
03430 Mismatch repair
OOM_0995
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fna03400
]
OOM_0995
Enzymes [BR:
fna01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
OOM_0995
DNA repair and recombination proteins [BR:
fna03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
OOM_0995
MMR (mismatch excision repair)
Other MMR factors
OOM_0995
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
DEAD
AAA_12
PhoH
AAA_30
ResIII
AAA_11
Motif
Other DBs
NCBI-ProteinID:
AFJ43458
LinkDB
All DBs
Position
complement(992113..994173)
Genome browser
AA seq
686 aa
AA seq
DB search
MQYTAEQQKIINHDLDKHALVSAVAGSGKTQTLIARIEYLINNKVPPNKILVLMYNKSAQ
LDFAERLRKVIKVDIAKLVNVRTMHSLGNSFLQAFAKAGFVKADKILKEYEIDVIISKLL
KLYQKEFKITKDIDNERVETFKEYISLLKSDLSLTNKKLSELNAKEMTLLDKVFLEFSKE
CEHQKAITYDDMIYLPAKLFEKDKNSIAQASNLYSYIIIDEYQDINQAQQFFLKCLVGQN
TYVMAVGDVDQTIYQWRGSTPYYMLEGFKKDFKNVRQYSLSYTFRYGDLVSLMANNIITN
NKKRHDNLCITYPKLDKTTDISILDSSDKVVLKLKALINSGVKASDIAILVRKYNSTTVF
ELSCLYHDLAYNVVADKNIFSENLFKAIYGYLMLFNKSQGFAKHSIEQRVEFIKAMLDYP
SLYLKKNVKQNLANKIAQDISASMNIISELTKTVDKSFKEKNILAVSASWRAIFNNTRIK
KSERAISFILETLDLKKQISKVSGETHSSKSKLQIIDGMSSFAKGKKSSLSEFIELLYEL
YIKSNQQGENDPNQIQIMSMHRAKGLEWDYVVVHDATEGGFFGEKNSKACDETIEEERRL
FYVAITRVKKHLFIVSSDDINRLSSWYEIKKNTYPKDLKCKNSLRFLYEGNLIDCQNHLE
TINNINIEDNKFSNKIFKRYYEGLSK
NT seq
2061 nt
NT seq
+upstream
nt +downstream
nt
atgcagtatacagctgaacaacaaaaaattataaatcatgatttggataaacatgcttta
gtttctgcggtcgccgggagtggaaaaactcaaactttgatagcaagaattgaatatcta
atcaataacaaagttcctccaaataaaatattggttttaatgtataacaaatcagctcaa
cttgattttgcagaaagacttagaaaagttattaaagtcgatattgcaaagttagttaac
gtaagaacaatgcattcattaggaaatagtttcttacaagcttttgcaaaagcaggattt
gttaaggcagataagattcttaaagagtatgaaatagatgtaattatttcaaagctactt
aaattatatcaaaaagaatttaaaataactaaagatattgataacgaaagggttgaaaca
tttaaagaatatatttcattattaaaatcagacttatctcttactaacaaaaaactcagt
gaacttaatgctaaagagatgacgcttttagataaagtatttttagagtttagcaaagaa
tgtgaacatcaaaaagctataacttatgatgatatgatttatcttcctgcaaagcttttt
gaaaaagataaaaatagcatagctcaagcaagtaacttgtattcttatataattatagat
gagtatcaggatattaatcaggcacaacagttttttttgaagtgcttagttggacaaaat
acttatgttatggctgtaggagatgttgatcagacaatataccaatggcgtggctccacc
ccatattatatgttagagggtttcaaaaaagattttaaaaatgtaagacaatacagcctt
tcttatacttttagatatggtgacttagtatctttgatggccaataatattattactaat
aataaaaaacgccatgataatctatgtattacataccctaaactagataaaacaacggat
attagtattcttgatagtagtgataaagtagttcttaaacttaaagcattgatcaatagt
ggtgtaaaagccagtgatatagctattcttgtacgtaaatataactcaacaactgtattt
gaattgagttgtttgtatcacgatctagcttataatgtggtagccgataagaatattttt
agtgaaaatctatttaaagctatatatggatatttgatgctatttaataagagtcaagga
tttgctaaacatagtattgaacaacgagttgagtttataaaagcaatgcttgattatcca
tcactatatctcaaaaaaaatgttaaacaaaatttggcaaataaaatagctcaagatatt
tcagctagcatgaatataatttcagaattgaccaaaacagttgataagtcatttaaagaa
aaaaatatattagcagtatcagctagttggagagctatttttaataatactcggattaaa
aagtcagaaagagcgataagttttatattagaaactctagatctcaaaaaacaaatttct
aaagtctctggagagacgcactcaagcaaatctaaattacaaattatagatggaatgagt
agttttgctaaaggtaagaaaagttcattatcagaatttatcgaacttttatatgagcta
tacataaaatcaaatcagcagggtgaaaatgatccaaatcagatccagatcatgtcaatg
catagagccaaaggtttagagtgggattatgttgttgtacatgatgctacagaaggaggc
tttttcggtgaaaaaaattctaaggcttgtgatgaaacaatcgaagaggagcggagatta
ttctacgttgctattacacgagttaagaaacatttgttcatcgtatcttcagatgatatt
aatcgtttatcatcatggtatgagatcaaaaaaaatacctacccaaaagatttgaaatgt
aaaaatagcttgagattcttatacgaaggcaatttaatagactgtcaaaatcatttagag
acaattaacaatatcaatattgaggataataaattttctaacaagatttttaaacgttat
tatgaaggtttatcaaagtag
DBGET
integrated database retrieval system
