Francisella orientalis Toba 04: OOM_1519
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Entry
OOM_1519 CDS
T02112
Name
(GenBank) DNA-(apurinic or apyrimidinic site) lyase
KO
K01142
exodeoxyribonuclease III [EC:
3.1.11.2
]
Organism
fna
Francisella orientalis Toba 04
Pathway
fna03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
fna00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
OOM_1519
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fna03400
]
OOM_1519
Enzymes [BR:
fna01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.2 exodeoxyribonuclease III
OOM_1519
DNA repair and recombination proteins [BR:
fna03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
OOM_1519
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Exo_endo_phos
Exo_endo_phos_2
Motif
Other DBs
NCBI-ProteinID:
AFJ43910
LinkDB
All DBs
Position
complement(1531065..1531853)
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AA seq
262 aa
AA seq
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MIKVMTFNANGIRAAAHKGFWEWFKMQDVDFLCIQETKAQFHQLEKDEQHFPNGYYYDFK
DAVKKGYSGTAIYAKKKPIKVIKELGLDWADDEGRYIQFDYEKFSIASLYLPSGSSGDVR
QEYKMQFLEKYKEILKEQAESGRDFIVCGDFNIVHKEIDIKNWKSNYGKTSGVLPEEQAW
LDHIFDDLGWVDTFRVINHEPLQYTWWSNRGQARANNVGWRIDYHISTPALKDKVVPESD
YVYKENWFSDHAPLTISYDFEV
NT seq
789 nt
NT seq
+upstream
nt +downstream
nt
atgataaaagtaatgacattcaatgctaatggtatacgcgcagcggctcataaaggattt
tgggaatggtttaaaatgcaggatgtagattttttgtgcatccaagaaacaaaagcacaa
tttcatcaattagaaaaagatgaacagcatttcccaaatggttattactatgattttaaa
gatgctgtaaaaaaaggctacagtggtacagctatttatgctaagaaaaaaccaataaaa
gttatcaaagagcttggcttagattgggctgatgatgaaggtaggtatatccaatttgat
tatgaaaaatttagtattgctagtttgtacctaccaagtggctctagtggagatgttcgc
caagagtataaaatgcagtttcttgaaaagtataaagaaatattaaaagaacaagcggaa
tctggtagagattttatagtttgtggtgattttaatattgtgcataaagaaatagatatc
aaaaactggaaatctaattatggtaagacatctggagtactaccagaggaacaagcttgg
ttagatcatatttttgatgatctaggttgggttgatactttccgagtaatcaatcatgaa
ccgttacaatacacttggtggtcaaatcgtggacaagcgcgtgcaaacaatgtcggctgg
aggattgattatcatatttcaacaccagctctaaaagataaggttgtgccagagtctgat
tatgtctacaaagaaaactggttttctgaccatgcgccactaactattagttatgatttt
gaggtttaa
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